RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ACAD10Q6JQN1 1059 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 ZNF746Q6NUN9 644 aaPredicted RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 GALNT7Q86SF2 657 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 CLYBLQ8N0X4 340 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 FAM109AQ8N4B1 249 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 CDKL2Q92772 493 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 MARVELD3Q96A59 401 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 CNDP1Q96KN2 507 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 CEP19Q96LK0 163 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 SENP7Q9BQF6 1050 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 MTG1Q9BT17 334 aaPredicted RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 MRPL9Q9BYD2 267 aaKnown RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 NAA50Q9GZZ1 169 aaKnown RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 PNPLA8Q9NP80 782 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 UBE2TQ9NPD8 197 aaPredicted RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 PKD2L2Q9NZM6 624 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 VANGL2Q9ULK5 521 aa12.7□□□□□ -0.38
USP3-203ENST00000538686 ZNF335Q9H4Z2 1342 aaPredicted RBP12.7□□□□□ -0.38
USP3-203ENST00000538686 FAM170AA1A519 330 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 TRIM49D1C9J1S8 452 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 ACOT8O14734 319 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 MARCH6O60337 910 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 NMT2O60551 498 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 DNAJB5O75953 348 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 NADKO95544 446 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 BMP1P13497 986 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 SLC1A6P48664 564 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 GJA9P57773 515 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 MRPS5P82675 430 aaKnown RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 RALGDSQ12967 914 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 INTS11Q5TA45 600 aaKnown RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 FAXCQ5TGI0 409 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CDHR3Q6ZTQ4 885 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 FKBP9P1Q75LS8 142 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CAMK1DQ8IU85 385 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 ANKRD13AQ8IZ07 590 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 PIK3C3Q8NEB9 887 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 ASB9Q96DX5 294 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 ZNF560Q96MR9 790 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 GLT1D1Q96MS3 346 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 KLHL32Q96NJ5 620 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 ZNF717Q9BY31 904 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 HOMER2Q9NSB8 354 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CHORDC1Q9UHD1 332 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 TNS3Q68CZ2 1445 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 TRIM38O00635 465 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 DCXO43602 365 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CAPN1P07384 714 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 MBL2P11226 248 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 BMP2P12643 396 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 PRKACAP17612 351 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 GAP43P17677 238 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 TBXAS1P24557 533 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 CCND2P30279 289 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 SLC7A1P30825 629 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 GRIA3P42263 894 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 MRPS15P82914 257 aaKnown RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 GALK2Q01415 458 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 RHDQ02161 417 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 C5orf22Q49AR2 442 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CBWD6Q4V339 395 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CBWD3Q5JTY5 395 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CBWD5Q5RIA9 395 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 UBE2UQ5VVX9 321 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 CES4AQ5XG92 561 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 ZNF773Q6PK81 442 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 UNC5AQ6ZN44 842 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 NKD2Q969F2 451 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 SLC39A13Q96H72 371 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 DEPDC7Q96QD5 511 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 GON7Q9BXV9 100 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 FRMD8P1Q9BZ68 369 aaPredicted RBP12.69□□□□□ -0.38
USP3-203ENST00000538686 DNPEPQ9ULA0 475 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 UGT2A1Q9Y4X1 527 aa12.69□□□□□ -0.38
USP3-203ENST00000538686 SAGE2PA6NJ88 616 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 SAC3D1A6NKF1 404 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 PLOD2O00469 737 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 ENPP3O14638 875 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 PHGDHO43175 533 aaKnown RBP12.68□□□□□ -0.38
USP3-203ENST00000538686 GAS2O43903 313 aaKnown RBP12.68□□□□□ -0.38
USP3-203ENST00000538686 TOM1L1O75674 476 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 CCNKO75909 580 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 PROSCO94903 275 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 EGFRP00533 1210 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 SERPINE1P05121 402 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 WEE2P0C1S8 567 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 GLULP15104 373 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 CFL1P23528 166 aaKnown RBP12.68□□□□□ -0.38
USP3-203ENST00000538686 NUMBP49757 651 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 SLC12A1Q13621 1099 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 UBE2SQ16763 222 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 NSMFQ6X4W1 530 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 OTOP3Q7RTS5 596 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 FAM71AQ8IYT1 594 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 RCOR2Q8IZ40 523 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 NAT8LQ8N9F0 302 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 VPS37AQ8NEZ2 397 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 BEST2Q8NFU1 509 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 SEPT8Q92599 483 aa12.68□□□□□ -0.38
USP3-203ENST00000538686 PBXIP1Q96AQ6 731 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms