RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 NT5C1BQ96P26 610 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 FAM111AQ96PZ2 611 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 GCNAQ96QF7 691 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 ACCSQ96QU6 501 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 RANBP9Q96S59 729 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 SRPK1Q96SB4 655 aaKnown RBP6.88□□□□□ -1.31
USP28-207ENST00000538475 PRPF18Q99633 342 aaKnown RBP6.88□□□□□ -1.31
USP28-207ENST00000538475 NEURL2Q9BR09 285 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 GPATCH1Q9BRR8 931 aaKnown RBP6.88□□□□□ -1.31
USP28-207ENST00000538475 EFHD1Q9BUP0 239 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 C1orf50Q9BV19 199 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 RUSC1Q9BVN2 902 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 RTFDC1Q9BY42 306 aaPredicted RBP6.88□□□□□ -1.31
USP28-207ENST00000538475 RBCK1Q9BYM8 510 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 RNF208Q9H0X6 261 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 CLK4Q9HAZ1 481 aaKnown RBP6.88□□□□□ -1.31
USP28-207ENST00000538475 ARMCX1Q9P291 453 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 SLC17A7Q9P2U7 560 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 IPO11Q9UI26 975 aaKnown RBP6.88□□□□□ -1.31
USP28-207ENST00000538475 RIMS3Q9UJD0 308 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 SYNPO2Q9UMS6 1093 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 NIP7Q9Y221 180 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP28-207ENST00000538475 TRIM17Q9Y577 477 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 PCDHB2Q9Y5E7 798 aa6.88□□□□□ -1.31
USP28-207ENST00000538475 A0A0B4J269 797 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 IGKV6D-41A0A0C4DH26 115 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 WDR91A4D1P6 747 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 CAPN8A6NHC0 703 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 CENPBD1B2RD01 187 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 EIF1AYO14602 144 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 PFDN6O15212 129 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 GPR182O15218 404 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 DHX15O43143 795 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 KDM1AO60341 852 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 MGEA5O60502 916 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 DNAJB5O75953 348 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 SLITRK3O94933 977 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 INHBBP09529 407 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 C6orf222P0C671 652 aaPredicted RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 RBP3P10745 1247 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 MCF2P10911 925 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 VDRP11473 427 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PRKCHP24723 683 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 DCKP27707 260 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 MAPK1P28482 360 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PCSK6P29122 969 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 SREBF1P36956 1147 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 GYG1P46976 350 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 GABRB2P47870 512 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PSMD8P48556 350 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PRKAA2P54646 552 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TUBB3Q13509 450 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 ITGA7Q13683 1181 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TFDP1Q14186 410 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 RGS21Q2M5E4 152 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TFDP3Q5H9I0 405 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 SLC10A5Q5PT55 438 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 FDX2Q6P4F2 183 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 GADL1Q6ZQY3 521 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 C15orf52Q6ZUT6 534 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 ARMCX6Q7L4S7 300 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 CARM1Q86X55 608 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 LRRC49Q8IUZ0 686 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TTC30BQ8N4P2 665 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 NIPA2Q8N8Q9 360 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 XXYLT1Q8NBI6 393 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PCYOX1LQ8NBM8 494 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PPP4R1Q8TF05 950 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 SREK1Q8WXA9 508 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 RPGRQ92834 1020 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 TTC17Q96AE7 1141 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 RMND5BQ96G75 393 aaPredicted RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 ACAP3Q96P50 834 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 SLITRK1Q96PX8 696 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 UBL7Q96S82 380 aaPredicted RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 FIZ1Q96SL8 496 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 UHRF1Q96T88 793 aaPredicted RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 RMDN3Q96TC7 470 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 CTRCQ99895 268 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 HSD17B14Q9BPX1 270 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 BCL7BQ9BQE9 202 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TRIM56Q9BRZ2 755 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 ANKRD60Q9BZ19 345 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TMEM8AQ9HCN3 771 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 XAB2Q9HCS7 855 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 CD320Q9NPF0 282 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 PARVAQ9NVD7 372 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 DNAJC17Q9NVM6 304 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 SELENONQ9NZV5 590 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 SUCOQ9UBS9 1254 aaKnown RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 APPL1Q9UKG1 709 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 TSC22D4Q9Y3Q8 395 aa6.87□□□□□ -1.31
USP28-207ENST00000538475 COL5A3P25940 1745 aaPredicted RBP6.87□□□□□ -1.31
USP28-207ENST00000538475 COL5A2P05997 1499 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 TMEM114B3SHH9 223 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 BOLA2-SMG1P6H3BVE0 249 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CHADO15335 359 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CYP26A1O43174 497 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 TPD52L2O43399 206 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms