RNA–Protein interactions for RNA: ENST00000529540.5

NR1H3-231, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 2

Gene NR1H3, Length 1,673 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-231	ENST00000529540	RNF8	O76064	485 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	SPATA31D3	P0C874	917 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	PDGFRA	P16234	1089 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	RFC1	P35251	1148 aa	Predicted RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	MAGEA4	P43358	317 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	PTPN9	P43378	593 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	TUB	P50607	506 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	TAF10	Q12962	218 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	TMED2	Q15363	201 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	TRIP13	Q15645	432 aa	Predicted RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	WASHC2D	Q5SRD0	308 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	SDHAF4	Q5VUM1	108 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	SNX30	Q5VWJ9	437 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	BSPRY	Q5W0U4	402 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	SPATA31D4	Q6ZUB0	917 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	ANKS1B	Q7Z6G8	1248 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	ADGRD2	Q7Z7M1	963 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	RBM23	Q86U06	439 aa	Known RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	EFHB	Q8N7U6	833 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	ENDOV	Q8N8Q3	282 aa	Known RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	CMAS	Q8NFW8	434 aa	Predicted RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	SLC2A13	Q96QE2	648 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	GAS2L1	Q99501	681 aa	Predicted RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	CNPY3	Q9BT09	278 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	ASAH2	Q9NR71	780 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	DNAJC17	Q9NVM6	304 aa	Known RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	TRPM5	Q9NZQ8	1165 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	ZMYM5	Q9UJ78	669 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	MAGED2	Q9UNF1	606 aa	Predicted RBP	15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	LRRC42	Q9Y546	428 aa		15.01	□□□□□ -0.01
NR1H3-231	ENST00000529540	YJEFN3	A6XGL0	299 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	FOXO6	A8MYZ6	492 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	NDC80	O14777	642 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	EDF1	O60869	148 aa	Known RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PEX11A	O75192	247 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PAPLN	O95428	1278 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	EPCAM	P16422	314 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	HMGA1	P17096	107 aa	Known RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PFKL	P17858	780 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	GCA	P28676	217 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	CDC25C	P30307	473 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	RPL7A	P62424	266 aa	Known RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PDK4	Q16654	411 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	DRICH1	Q6PGQ1	229 aa	Predicted RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	RHOT1	Q8IXI2	618 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	EXD1	Q8NHP7	514 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	ZNF398	Q8TD17	642 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	GPR152	Q8TDT2	470 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	CLEC4C	Q8WTT0	213 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	RNF139	Q8WU17	664 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	SSU72	Q9NP77	194 aa	Known RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PHTF1	Q9UMS5	762 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	CHKB	Q9Y259	395 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540		A6NHS1	94 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	SOBP	A7XYQ1	873 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	RFXAP	O00287	272 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	DNALI1	O14645	258 aa	Predicted RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	HNRNPCL1	O60812	293 aa	Known RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	F9	P00740	461 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	ZDHHC11B	P0C7U3	371 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	NCAM1	P13591	858 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	HOXB8	P17481	243 aa	Predicted RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PTPN2	P17706	415 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	CALB2	P22676	271 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PSMA2	P25787	234 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	ALDH3A1	P30838	453 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	USP46	P62068	366 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	KCNC3	Q14003	757 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	SLC25A52	Q3SY17	297 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	DCAF6	Q58WW2	860 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	STRADA	Q7RTN6	431 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	BHLHA9	Q7RTU4	235 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PHLDB2	Q86SQ0	1253 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	VSIG1	Q86XK7	387 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	APLF	Q8IW19	511 aa	Predicted RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	KIRREL3	Q8IZU9	778 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	C10orf82	Q8WW14	230 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	ERP27	Q96DN0	273 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PIWIL1	Q96J94	861 aa	Known RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PWWP2A	Q96N64	755 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	OSBPL8	Q9BZF1	889 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PRKD2	Q9BZL6	878 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	TTYH1	Q9H313	450 aa	Predicted RBP	15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PRDM12	Q9H4Q4	367 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	TBK1	Q9UHD2	729 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	PLXNA3	P51805	1871 aa		15	□□□□□ -0.01
NR1H3-231	ENST00000529540	MTCL1	Q9Y4B5	1905 aa	Known RBP	14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	CLUH	O75153	1309 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	GRAP2	O75791	330 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	RASSF2	P50749	326 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	MTA1	Q13330	715 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	TAF11	Q15544	211 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	TCEAL5	Q5H9L2	206 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	CAPRIN2	Q6IMN6	1127 aa	Known RBP	14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	LLGL2	Q6P1M3	1020 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	KLHDC10	Q6PID8	442 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	DEFB106A	Q8N104	65 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	RXFP2	Q8WXD0	754 aa		14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	KHSRP	Q92945	711 aa	Known RBP eCLIP	14.99	□□□□□ -0.01
NR1H3-231	ENST00000529540	NAF1	Q96HR8	494 aa	Known RBP	14.99	□□□□□ -0.01

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms