RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PCDHA3Q9Y5H8 950 aa7.69□□□□□ -1.18
CD44-228ENST00000528455 DOCK6Q96HP0 2047 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 NOTCH4Q99466 2003 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CCDC66A2RUB6 948 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GRID2IPA4D2P6 1211 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 M0QYT0 321 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CCL16O15467 120 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TLR5O60602 858 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GJB6O95452 261 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GLP2RO95838 553 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TRUB2O95900 331 aaKnown RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 IGLV3-25P01717 112 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 KRT7P08729 469 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 HDCP19113 662 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 COMTP21964 271 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CTNNA2P26232 953 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GABRR2P28476 465 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CASQ1P31415 396 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CXCR3P49682 368 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 PGFP49763 221 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 PEX5P50542 639 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TAGLNQ01995 201 aaKnown RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 ZP2Q05996 745 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 DEUP1Q05D60 604 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 RING1Q06587 406 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 ZNF252P-AS1Q0IIN9 211 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 IFRD2Q12894 506 aaPredicted RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 TUBB2AQ13885 445 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 RPS6KA1Q15418 735 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.68□□□□□ -1.18
CD44-228ENST00000528455 ATAT1Q5SQI0 421 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 ERMARDQ5T6L9 678 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 PAPD7Q5XG87 772 aaKnown RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 TRNP1Q6NT89 227 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 ANKRD54Q6NXT1 300 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GAREM2Q75VX8 874 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 POLNQ7Z5Q5 900 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GPR149Q86SP6 731 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TMC8Q8IU68 726 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CCNJLQ8IV13 435 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 RHOT1Q8IXI2 618 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 RCOR2Q8IZ40 523 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 C17orf53Q8N3J3 647 aaPredicted RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 ARFGAP1Q8N6T3 406 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 SMRP1Q8NCR6 262 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 MRPS31Q92665 395 aaKnown RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 CD101Q93033 1021 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 ZNF707Q96C28 371 aaPredicted RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 HES6Q96HZ4 224 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 C1orf74Q96LT6 269 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CFAP57Q96MR6 1250 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 CORO1BQ9BR76 489 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TUBB2BQ9BVA1 445 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TRIM7Q9C029 511 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 BHLHE41Q9C0J9 482 aaPredicted RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 RNF38Q9H0F5 515 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 ADAM7Q9H2U9 754 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 SMOC2Q9H3U7 446 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 SUV39H2Q9H5I1 410 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 SFXN1Q9H9B4 322 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 PIDD1Q9HB75 910 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 ASAH2Q9NR71 780 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 GMIPQ9P107 970 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 SLC12A6Q9UHW9 1150 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 USP18Q9UMW8 372 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 TLR6Q9Y2C9 796 aa7.68□□□□□ -1.18
CD44-228ENST00000528455 HBS1LQ9Y450 684 aaKnown RBP7.68□□□□□ -1.18
CD44-228ENST00000528455 TRIOO75962 3097 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 FAM170AA1A519 330 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 CTAGE9A4FU28 777 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 CES2O00748 559 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 GNB5O14775 395 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 PSTPIP1O43586 416 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 DCXO43602 365 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 LRCH4O75427 683 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 ZRANB2O95218 330 aaKnown RBP eCLIP7.67□□□□□ -1.18
CD44-228ENST00000528455 OLFM2O95897 454 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 TBX18O95935 607 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 OAS1P00973 400 aaKnown RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 RHOP08100 348 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 TNNT1P13805 278 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 MIPP30301 263 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 CCR1P32246 355 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 RDXP35241 583 aaKnown RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 ADRA1BP35368 520 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 MLLT6P55198 1093 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 HDAC4P56524 1084 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 PPP2R5DQ14738 602 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 C15orf59Q2T9L4 293 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 ARL13BQ3SXY8 428 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 TMEM31Q5JXX7 168 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 BRMS1LQ5PSV4 323 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 C10orf120Q5SQS8 335 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 CES5AQ6NT32 575 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 SCYL2Q6P3W7 929 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 SYCE2Q6PIF2 218 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 PDZD4Q76G19 769 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 RSRC2Q7L4I2 434 aaKnown RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 GRASPQ7Z6J2 395 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 MAP7D3Q8IWC1 876 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms