RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MYO16Q9Y6X6 1858 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 GMNCA6NCL1 334 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 RASA4BC9J798 803 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 E9PAM4 449 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 RASA4O43374 803 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 PIAS1O75925 651 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TIMP1P01033 207 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TUBP50607 506 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 ZBTB17Q13105 803 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 MPP2Q14168 576 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TRIP4Q15650 581 aaPredicted RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 LRRC8BQ6P9F7 803 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 FOXR1Q6PIV2 292 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TMCO2Q7Z6W1 182 aaPredicted RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 ZNF683Q8IZ20 524 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 MPP5Q8N3R9 675 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 LZTR1Q8N653 840 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 GIPC2Q8TF65 315 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 DCAKDQ8WVC6 231 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 CEP295NLQ96MC4 621 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TSGA13Q96PP4 275 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 VAT1Q99536 393 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 EBNA1BP2Q99848 306 aaKnown RBP21.25■□□□□ 0.99
VPS28-209ENST00000528142 CLSTN3Q9BQT9 956 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 TTLL3Q9Y4R7 772 aa21.25■□□□□ 0.99
VPS28-209ENST00000528142 WASH4PA8MWX3 477 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 KIAA0355O15063 1070 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 GSTA2P09210 222 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 CD68P34810 354 aaPredicted RBP21.24■□□□□ 0.99
VPS28-209ENST00000528142 DEFB103AP81534 67 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 TEX44Q53QW1 395 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 AFMIDQ63HM1 303 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 NLRP14Q86W24 1093 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 SLC39A11Q8N1S5 342 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 MRRFQ96E11 262 aaKnown RBP21.24■□□□□ 0.99
VPS28-209ENST00000528142 CFAP36Q96G28 342 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 TRHDEQ9UKU6 1024 aa21.24■□□□□ 0.99
VPS28-209ENST00000528142 ZBTB24O43167 697 aaPredicted RBP21.23■□□□□ 0.99
VPS28-209ENST00000528142 IGLV3-27P01718 113 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 SOD2P04179 222 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 CSF2RAP15509 400 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 COG7P83436 770 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 KBTBD12Q3ZCT8 623 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 RTL3Q8N8U3 475 aaKnown RBP21.23■□□□□ 0.99
VPS28-209ENST00000528142 CCT8L2Q96SF2 557 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 UBE2OQ9C0C9 1292 aaKnown RBP21.23■□□□□ 0.99
VPS28-209ENST00000528142 CCDC134Q9H6E4 229 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 PRDM5Q9NQX1 630 aaPredicted RBP21.23■□□□□ 0.99
VPS28-209ENST00000528142 MARCH2Q9P0N8 246 aa21.23■□□□□ 0.99
VPS28-209ENST00000528142 TRDMT1O14717 391 aaKnown RBP21.22■□□□□ 0.99
VPS28-209ENST00000528142 CPP00450 1065 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 CCNCP24863 283 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 STX2P32856 288 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 MSH2P43246 934 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 TUFMP49411 452 aaKnown RBP21.22■□□□□ 0.99
VPS28-209ENST00000528142 MS4A13Q5J8X5 152 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 C10orf120Q5SQS8 335 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 KIAA1841Q6NSI8 718 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 UNC5AQ6ZN44 842 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 PRPF39Q86UA1 669 aaKnown RBP21.22■□□□□ 0.99
VPS28-209ENST00000528142 MZB1Q8WU39 189 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 ZNF558Q96NG5 402 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 SLC39A8Q9C0K1 460 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 GBA3Q9H227 469 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 KCNK9Q9NPC2 374 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 NDFIP2Q9NV92 336 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 SENP1Q9P0U3 644 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 AFF4Q9UHB7 1163 aaKnown RBP21.22■□□□□ 0.99
VPS28-209ENST00000528142 ABLIM3O94929 683 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 FAM107AO95990 144 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 APOEP02649 317 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 PRKCHP24723 683 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 HNRNPH2P55795 449 aaKnown RBP21.22■□□□□ 0.99
VPS28-209ENST00000528142 DSG1Q02413 1049 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 ARHGAP36Q6ZRI8 547 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 SLC44A1Q8WWI5 657 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 TEKT5Q96M29 485 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 TRABDQ9H4I3 376 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 MPP6Q9NZW5 540 aa21.22■□□□□ 0.99
VPS28-209ENST00000528142 LTBP2Q14767 1821 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 DFFAO00273 331 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 C2CD2LO14523 706 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 NDUFAB1O14561 156 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 SUN1O94901 812 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 SEC24AO95486 1093 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 KRT15P19012 456 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 WDR5P61964 334 aaKnown RBP21.21■□□□□ 0.99
VPS28-209ENST00000528142 SPOUT1Q5T280 376 aaKnown RBP21.21■□□□□ 0.99
VPS28-209ENST00000528142 KCTD11Q693B1 232 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 FAM117BQ6P1L5 589 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 MIB1Q86YT6 1006 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 ATP6V0D2Q8N8Y2 350 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 ZNF461Q8TAF7 563 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 BTN2A3PQ96KV6 586 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 AGAP3Q96P47 875 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 CCSER2Q9H7U1 834 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 HSFX1Q9UBD0 423 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 PPARGC1AQ9UBK2 798 aaKnown RBP21.21■□□□□ 0.99
VPS28-209ENST00000528142 RSPH14Q9UHP6 348 aa21.21■□□□□ 0.99
VPS28-209ENST00000528142 MAD1L1Q9Y6D9 718 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms