RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 GBE1Q04446 702 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 TMEM150AQ86TG1 271 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 RBM23Q86U06 439 aaKnown RBP19.43■□□□□ 0.7
VPS28-207ENST00000526977 MIB1Q86YT6 1006 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 RTP4Q96DX8 246 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 LRRC3Q9BY71 257 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 PRO3102Q9H379 93 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 ANLNQ9NQW6 1124 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 ZDHHC7Q9NXF8 308 aa19.43■□□□□ 0.7
VPS28-207ENST00000526977 KCNN4O15554 427 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 FGF19O95750 216 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 ABHD2P08910 425 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 CDC25CP30307 473 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 LSP1P33241 339 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 HCAR3P49019 387 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 NR2C2P49116 596 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 PDIA2Q13087 525 aaKnown RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 FNBP1LQ5T0N5 605 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 FAM182AQ5T1J6 154 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 ACBD5Q5T8D3 534 aaPredicted RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 CHRDL2Q6WN34 429 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 LRRN4Q8WUT4 740 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 PPP2R3CQ969Q6 453 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 FCRL2Q96LA5 508 aaPredicted RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 CDCA3Q99618 268 aaPredicted RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 ASAH2Q9NR71 780 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 OR12D3Q9UGF7 316 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 SLC12A8A0AV02 714 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 CFAP69A5D8W1 941 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 H3BRJ5 948 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 I6L893 689 aaPredicted RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 CCL16O15467 120 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 XYLBO75191 536 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 OAS1P00973 400 aaKnown RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 APOEP02649 317 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 PTPN2P17706 415 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 GABRR2P28476 465 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 COG7P83436 770 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 STAT4Q14765 748 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 HIF1AQ16665 826 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 DUSP6Q16828 381 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 ADGRD2Q7Z7M1 963 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 TMC8Q8IU68 726 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 MRPS31Q92665 395 aaKnown RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 MRPL38Q96DV4 380 aaKnown RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 C1orf74Q96LT6 269 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 TTC25Q96NG3 672 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 STMN4Q9H169 189 aaPredicted RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 ETNK2Q9NVF9 386 aa19.42■□□□□ 0.7
VPS28-207ENST00000526977 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 MTCL1Q9Y4B5 1905 aaKnown RBP19.42■□□□□ 0.7
VPS28-207ENST00000526977 LAMA3Q16787 3333 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 EPOPA6NHQ4 379 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 SMAPO00193 183 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 COCHO43405 550 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 TMEM63AO94886 807 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 IGLV3-27P01718 113 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 POU2F2P09086 479 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 ARL4CP56559 192 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 SEMA3BQ13214 749 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 XRCC4Q13426 336 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 MSS51Q4VC12 460 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 NUGGCQ68CJ6 796 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 ZBED8Q8IZ13 594 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 ATP6V0D2Q8N8Y2 350 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 LEMD2Q8NC56 503 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 GCNAQ96QF7 691 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 CCDC77Q9BR77 488 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 PAK5Q9P286 719 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 XPO7Q9UIA9 1087 aaKnown RBP19.41■□□□□ 0.7
VPS28-207ENST00000526977 BANF1O75531 89 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 RFPL2O75678 378 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 MMP13P45452 471 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 BASP1P80723 227 aaKnown RBP19.41■□□□□ 0.7
VPS28-207ENST00000526977 NCBP2-AS2Q69YL0 99 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 GAREM2Q75VX8 874 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 EXOC3L1Q86VI1 746 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 CCDC13Q8IYE1 715 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 MDM1Q8TC05 714 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 BTN2A3PQ96KV6 586 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 EPAS1Q99814 870 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 CORO1BQ9BR76 489 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 PHACTR1Q9C0D0 580 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 CNOT10Q9H9A5 744 aaKnown RBP19.41■□□□□ 0.7
VPS28-207ENST00000526977 DTLQ9NZJ0 730 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 MFHAS1Q9Y4C4 1052 aa19.41■□□□□ 0.7
VPS28-207ENST00000526977 A0A087WUV0 522 aaPredicted RBP19.4■□□□□ 0.7
VPS28-207ENST00000526977 EEF2KO00418 725 aaKnown RBP19.4■□□□□ 0.7
VPS28-207ENST00000526977 CREB3O43889 395 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 PAGE1O75459 146 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 PFKLP17858 780 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 HTR7P34969 479 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 NRIP1P48552 1158 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 EPHA5P54756 1037 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 HS6ST3Q8IZP7 471 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 PRKD2Q9BZL6 878 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 RNF38Q9H0F5 515 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 ARHGEF4Q9NR80 690 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 CTNNAL1Q9UBT7 734 aa19.4■□□□□ 0.7
VPS28-207ENST00000526977 C2orf78A6NCI8 922 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms