RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ZNF548	Q8NEK5	533 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-223	ENST00000526553	OTUD7A	Q8TE49	926 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-223	ENST00000526553	CLEC4C	Q8WTT0	213 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	LTV1	Q96GA3	475 aa	Predicted RBP	5.23	□□□□□ -1.57
CD44-223	ENST00000526553	DDX23	Q9BUQ8	820 aa	Known RBP	5.23	□□□□□ -1.57
CD44-223	ENST00000526553	SORBS1	Q9BX66	1292 aa	Known RBP	5.23	□□□□□ -1.57
CD44-223	ENST00000526553	THSD1	Q9NS62	852 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	POT1	Q9NUX5	634 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	5.23	□□□□□ -1.57
CD44-223	ENST00000526553	MSRB1	Q9NZV6	116 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	NDUFAF4	Q9P032	175 aa		5.23	□□□□□ -1.57
CD44-223	ENST00000526553	DPPA5	A6NC42	116 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	ZNF814	B7Z6K7	855 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	MCIDAS	D6RGH6	385 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	HEXIM1	O94992	359 aa	Known RBP	5.22	□□□□□ -1.57
CD44-223	ENST00000526553	SERPINA4	P29622	427 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	PCP4	P48539	62 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	CCT4	P50991	539 aa	Known RBP	5.22	□□□□□ -1.57
CD44-223	ENST00000526553	RCAN1	P53805	252 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	GALNTL6	Q49A17	601 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	EPHA10	Q5JZY3	1008 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	DGAT2L7P	Q6IED9	249 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	ERAP2	Q6P179	960 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	ENDOV	Q8N8Q3	282 aa	Known RBP	5.22	□□□□□ -1.57
CD44-223	ENST00000526553	WDR83	Q9BRX9	315 aa	Known RBP	5.22	□□□□□ -1.57
CD44-223	ENST00000526553	BRD8	Q9H0E9	1235 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	ZBTB40	Q9NUA8	1239 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	TMLHE	Q9NVH6	421 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	PCDHA12	Q9UN75	941 aa		5.22	□□□□□ -1.57
CD44-223	ENST00000526553	AGAP5	A6NIR3	686 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	KCNJ18	B7U540	433 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	VEGFA	P15692	232 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-223	ENST00000526553	ALDH7A1	P49419	539 aa	Known RBP	5.21	□□□□□ -1.58
CD44-223	ENST00000526553	TRIM14	Q14142	442 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	RPS6KA2	Q15349	733 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	INPP5J	Q15735	1006 aa	Predicted RBP	5.21	□□□□□ -1.58
CD44-223	ENST00000526553	SMTNL2	Q2TAL5	461 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	PIK3CD-AS1	Q5SR53	167 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	TTC39A	Q5SRH9	613 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	C10orf76	Q5T2E6	689 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	AWAT2	Q6E213	333 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	CYB5R4	Q7L1T6	521 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	GLCCI1	Q86VQ1	547 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	C3orf49	Q96BT1	292 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	MSI2	Q96DH6	328 aa	Known RBP	5.21	□□□□□ -1.58
CD44-223	ENST00000526553	ADAD1	Q96M93	576 aa	Known RBP	5.21	□□□□□ -1.58
CD44-223	ENST00000526553	ABHD16B	Q9H3Z7	469 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	DECR2	Q9NUI1	292 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	GRHPR	Q9UBQ7	328 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	UTS2R	Q9UKP6	389 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	LAMP3	Q9UQV4	416 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	TNFSF13B	Q9Y275	285 aa		5.21	□□□□□ -1.58
CD44-223	ENST00000526553	RHOD	O00212	210 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	HNRNPR	O43390	633 aa	Known RBP	5.2	□□□□□ -1.58
CD44-223	ENST00000526553	NFATC1	O95644	943 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	TOMM40	O96008	361 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	FGF2	P09038	288 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PSG1	P11464	419 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	TNFRSF1B	P20333	461 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	STAT1	P42224	750 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	DCTN1	Q14203	1278 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PDCD2	Q16342	344 aa	Predicted RBP	5.2	□□□□□ -1.58
CD44-223	ENST00000526553	GPR162	Q16538	588 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	TUBB8	Q3ZCM7	444 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	ZNF260	Q3ZCT1	412 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	LEXM	Q3ZCV2	418 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	MANEA	Q5SRI9	462 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	TTLL5	Q6EMB2	1281 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	TECPR1	Q7Z6L1	1165 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PIM3	Q86V86	326 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	ZNF366	Q8N895	744 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	EME1	Q96AY2	570 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	TRAPPC9	Q96Q05	1148 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PIGS	Q96S52	555 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	IL21R	Q9HBE5	538 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PDE11A	Q9HCR9	933 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	DTX4	Q9Y2E6	619 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PKP3	Q9Y446	797 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	PCDHA10	Q9Y5I2	948 aa		5.2	□□□□□ -1.58
CD44-223	ENST00000526553	IGLV5-39	A0A0G2JS06	123 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	MYMK	A6NI61	221 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	FOXO6	A8MYZ6	492 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553		H0Y3Z8	333 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	ATG13	O75143	517 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	EPN2	O95208	641 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	LCK	P06239	509 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	CST5	P28325	142 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-223	ENST00000526553	CIITA	P33076	1130 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	MCM2	P49736	904 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	GALNT3	Q14435	633 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	C6orf10	Q5SRN2	563 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	C10orf62	Q5T681	223 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-223	ENST00000526553	CCDC174	Q6PII3	467 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	COLCA1	Q6ZS62	124 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	TRAPPC12	Q8WVT3	735 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	CENPI	Q92674	756 aa	Predicted RBP	5.19	□□□□□ -1.58
CD44-223	ENST00000526553	KAT2A	Q92830	837 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	ZBTB9	Q96C00	473 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	NLRP4	Q96MN2	994 aa		5.19	□□□□□ -1.58
CD44-223	ENST00000526553	SPAG4	Q9NPE6	437 aa		5.19	□□□□□ -1.58

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