RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SPRP35270 261 aaPredicted RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 MLH1P40692 756 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 ZNF135P52742 658 aaPredicted RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 DAOAP59103 153 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 TPI1P60174 286 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 KDSRQ06136 332 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 ARL13BQ3SXY8 428 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 SNX30Q5VWJ9 437 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 TWF2Q6IBS0 349 aaKnown RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 HFE2Q6ZVN8 426 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 SCUBE1Q8IWY4 988 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 KIRREL3Q8IZU9 778 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 TMEM86AQ8N2M4 240 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 PGAP3Q96FM1 320 aaPredicted RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 EBF4Q9BQW3 602 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 ULBP1Q9BZM6 244 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 SLC38A7Q9NVC3 462 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 COPG2Q9UBF2 871 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 PLA2G4CQ9UP65 541 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 PRR5-ARHGAP8B1AHC4 643 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 ITM2AO43736 263 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 CIB2O75838 187 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 FYNP06241 537 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 MYL4P12829 197 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 KCNA4P22459 653 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 LHX1P48742 406 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 CPT1AP50416 773 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 ARHGAP8P85298 464 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 PPIDQ08752 370 aaKnown RBP21.75■■□□□ 1.07
VPS28-205ENST00000526204 TRMT5Q32P41 509 aaKnown RBP21.75■■□□□ 1.07
VPS28-205ENST00000526204 PRAMEF19Q5SWL8 479 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 TRIM68Q6AZZ1 485 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 TMEM135Q86UB9 458 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.75■■□□□ 1.07
VPS28-205ENST00000526204 OR52K1Q8NGK4 314 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 FAM161BQ96MY7 647 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 WDR6Q9NNW5 1121 aaKnown RBP21.75■■□□□ 1.07
VPS28-205ENST00000526204 DDX43Q9NXZ2 648 aaKnown RBP21.75■■□□□ 1.07
VPS28-205ENST00000526204 ZNF212Q9UDV6 495 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 TRHDEQ9UKU6 1024 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 VANGL2Q9ULK5 521 aa21.75■■□□□ 1.07
VPS28-205ENST00000526204 MAGEB16A2A368 324 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 NRP1O14786 923 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 F9P00740 461 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 RBBP8Q99708 897 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 FAM72CH0Y354 149 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 LYPLA1O75608 230 aaPredicted RBP21.74■■□□□ 1.07
VPS28-205ENST00000526204 USP1O94782 785 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 GNAT1P11488 350 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 MAGEA12P43365 314 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 SERPINB8P50452 374 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 SESN3P58005 492 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 THOC5Q13769 683 aaKnown RBP21.74■■□□□ 1.07
VPS28-205ENST00000526204 FAM72AQ5TYM5 149 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 FAM72DQ6L9T8 149 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 FAM72BQ86X60 149 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 C10orf107Q8IVU9 208 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 RNF169Q8NCN4 708 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 ZNF333Q96JL9 665 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 SENP8Q96LD8 212 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 ZNF778Q96MU6 729 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 FCRL3Q96P31 734 aaPredicted RBP21.74■■□□□ 1.07
VPS28-205ENST00000526204 VAT1Q99536 393 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 KATNAL1Q9BW62 490 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 CASS4Q9NQ75 786 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 CRTAC1Q9NQ79 661 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 SNX15Q9NRS6 342 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 NMRK1Q9NWW6 199 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 DNAJC28Q9NX36 388 aa21.74■■□□□ 1.07
VPS28-205ENST00000526204 SEC23IPQ9Y6Y8 1000 aaKnown RBP21.74■■□□□ 1.07
VPS28-205ENST00000526204 C17orf102A2RUQ5 167 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 YJEFN3A6XGL0 299 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 AP1G2O75843 785 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 PRKCGP05129 697 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 LIMK2P53671 638 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 TUBB3Q13509 450 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 RAB41Q5JT25 222 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 KIAA0319Q5VV43 1072 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 OLFML2BQ68BL8 750 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 ITPRIPL1Q6GPH6 555 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 CES3Q6UWW8 571 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 DNAAF3Q8N9W5 541 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 HDAC11Q96DB2 347 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 TSPYL2Q9H2G4 693 aaPredicted RBP21.73■■□□□ 1.07
VPS28-205ENST00000526204 TMEM216Q9P0N5 145 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 CORO1CQ9ULV4 474 aaPredicted RBP21.73■■□□□ 1.07
VPS28-205ENST00000526204 TBX10O75333 385 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 SMNDC1O75940 238 aaKnown RBP eCLIP21.73■■□□□ 1.07
VPS28-205ENST00000526204 RALBP11234 206 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 NCAM1P13591 858 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 CPA3P15088 417 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 ALOX15P16050 662 aaPredicted RBP21.73■■□□□ 1.07
VPS28-205ENST00000526204 ABL2P42684 1182 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 HARS2P49590 506 aaKnown RBP21.73■■□□□ 1.07
VPS28-205ENST00000526204 ABCE1P61221 599 aaKnown RBP21.73■■□□□ 1.07
VPS28-205ENST00000526204 MXRA7P84157 204 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 PPM1JQ5JR12 505 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 KCTD11Q693B1 232 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 LRRC74BQ6ZQY2 392 aa21.73■■□□□ 1.07
VPS28-205ENST00000526204 FAM35AQ86V20 835 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms