RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SCAMP5Q8TAC9 235 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 HMGB4Q8WW32 186 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 ASB5Q8WWX0 329 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 ADAD1Q96M93 576 aaKnown RBP4.49□□□□□ -1.69
CD44-217ENST00000525348 RTKNQ9BST9 563 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 HTATIP2Q9BUP3 242 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 DECR2Q9NUI1 292 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 RCE1Q9Y256 329 aa4.49□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3DA0A087WVF3 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3IA0A087WXS9 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3EA0A087X179 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3KA0A087X1G2 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3BA6NDS4 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3FA6NER0 549 aaPredicted RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3LB9A6J9 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 ACKR2O00590 384 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 NEURL1O76050 574 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 OAZ2O95190 189 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3HP0C7X1 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 SNHG28P0DPA3 235 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 CIITAP33076 1130 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 SERPINF1P36955 418 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 ALDH7A1P49419 539 aaKnown RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 HTR6P50406 440 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 ZBTB16Q05516 673 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 UBE4AQ14139 1066 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 PUM3Q15397 648 aaKnown RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 ARL13AQ5H913 290 aaPredicted RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3GQ6DHY5 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3CQ6IPX1 549 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 PGBD2Q6P3X8 592 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 ZNF549Q6P9A3 640 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 ZDHHC17Q8IUH5 632 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 TBC1D3Q8IZP1 549 aaPredicted RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 RSC1A1Q92681 617 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 FRMD8Q9BZ67 464 aaPredicted RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 ARHGAP39Q9C0H5 1083 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 SEPSECSQ9HD40 501 aaKnown RBP4.48□□□□□ -1.69
CD44-217ENST00000525348 LRCH1Q9Y2L9 728 aa4.48□□□□□ -1.69
CD44-217ENST00000525348 CCDC194A0A1B0GVG4 234 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 DPPA5A6NC42 116 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 MBD3L5A6NJ08 208 aaPredicted RBP4.47□□□□□ -1.69
CD44-217ENST00000525348 FOXO6A8MYZ6 492 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 KCNJ18B7U540 433 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 MCIDASD6RGH6 385 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 SKAP2O75563 359 aaPredicted RBP4.47□□□□□ -1.69
CD44-217ENST00000525348 ACTL6BO94805 426 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 LARGE1O95461 756 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 NFATC1O95644 943 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 RCAN1P53805 252 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 ADPRHP54922 357 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 GAD2Q05329 585 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 PPATQ06203 517 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 RAPGEF1Q13905 1077 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 PTGR1Q14914 329 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 GALNTL6Q49A17 601 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 ZNF569Q5MCW4 686 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 TTC22Q5TAA0 569 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 HMBOX1Q6NT76 420 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 TMEM88Q6PEY1 159 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 SLC44A2Q8IWA5 706 aaPredicted RBP4.47□□□□□ -1.69
CD44-217ENST00000525348 SPICE1Q8N0Z3 855 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 TMEM199Q8N511 208 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 FAM110DQ8TAY7 271 aaPredicted RBP4.47□□□□□ -1.69
CD44-217ENST00000525348 STT3BQ8TCJ2 826 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 INPP5DQ92835 1189 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 CLMNQ96JQ2 1002 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 RMDN3Q96TC7 470 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 TMEM120AQ9BXJ8 343 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 PCGF6Q9BYE7 350 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 PABPC3Q9H361 631 aaKnown RBP4.47□□□□□ -1.69
CD44-217ENST00000525348 MAP6D1Q9H9H5 199 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 PRDM8Q9NQV8 689 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 TAGLN3Q9UI15 199 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 SLC8A2Q9UPR5 921 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 DAAM1Q9Y4D1 1078 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 PCDHA10Q9Y5I2 948 aa4.47□□□□□ -1.69
CD44-217ENST00000525348 ITGA2BP08514 1039 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 POLD2P49005 469 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 THBS3P49746 956 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 P2RX3P56373 397 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 ENTPD8Q5MY95 495 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 SULT6B1Q6IMI4 303 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 NFRKBQ6P4R8 1299 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 CYB5R4Q7L1T6 521 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 TMEM217Q8N7C4 229 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 TMEM174Q8WUU8 243 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 POF1BQ8WVV4 589 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 NPAS1Q99742 590 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 HDHD5Q9BXW7 423 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 ABHD16BQ9H3Z7 469 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 ZNF304Q9HCX3 659 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 LRFN1Q9P244 771 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 HERC5Q9UII4 1024 aaKnown RBP4.46□□□□□ -1.7
CD44-217ENST00000525348 ANAPC4Q9UJX5 808 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 PKP3Q9Y446 797 aa4.46□□□□□ -1.7
CD44-217ENST00000525348 H0YGN5 161 aa4.45□□□□□ -1.7
CD44-217ENST00000525348 MSI1O43347 362 aaKnown RBP4.45□□□□□ -1.7
CD44-217ENST00000525348 SYF2O95926 243 aaKnown RBP4.45□□□□□ -1.7
CD44-217ENST00000525348 IFNA2P01563 188 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms