RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CFAP57Q96MR6 1250 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 NOX5Q96PH1 765 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 BATF3Q9NR55 127 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 GDE1Q9NZC3 331 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 SPAG17Q6Q759 2223 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 LRRC53A6NM62 1247 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 F5H423 210 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 TACC1O75410 805 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 VDRP11473 427 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 CTHP32929 405 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 CETN2P41208 172 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 KRT72Q14CN4 511 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 MIIPQ5JXC2 388 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 C12orf40Q86WS4 652 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 ANKRD52Q8NB46 1076 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 OR6K2Q8NGY2 324 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 PPP1R13BQ96KQ4 1090 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 RPRD1AQ96P16 312 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 ECT2Q9H8V3 914 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 METTL5Q9NRN9 209 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 HAUS2Q9NVX0 235 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 STK39Q9UEW8 545 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 PRKAG3Q9UGI9 489 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 CYTH4Q9UIA0 394 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 CLEC4EQ9ULY5 219 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 ATXN2Q99700 1313 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 DCHS1Q96JQ0 3298 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 ZFYVE26Q68DK2 2539 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 ZNF318Q5VUA4 2279 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CHURC1-FNTBB4DL54 471 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 GJA4P35212 333 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 FNTBP49356 437 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 NEK2P51955 445 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SNRPFP62306 86 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 KLHL30Q0D2K2 578 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 MYBPC3Q14896 1274 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CCDC117Q8IWD4 279 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 MFSD6LQ8IWD5 586 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 KIAA2013Q8IYS2 634 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 FBXO44Q9H4M3 255 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 THAP9Q9H5L6 903 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SLC40A1Q9NP59 571 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 MPP6Q9NZW5 540 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 KIAA1522Q9P206 1035 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 EFR3BQ9Y2G0 817 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 L3MBTL1Q9Y468 752 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DAAM1Q9Y4D1 1078 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 KANSL1LA0AUZ9 987 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 H0Y626 953 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 HGSO14964 777 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SCAMP1O15126 338 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 LTFP02788 710 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TYRP14679 529 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 NSFP46459 744 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 PPM1FP49593 454 aaPredicted RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SEMG2Q02383 582 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CENPCQ03188 943 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DMWDQ09019 674 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 GRSF1Q12849 480 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 NR1H3Q13133 447 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 ANGPT1Q15389 498 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SMTNL2Q2TAL5 461 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 KLHDC7AQ5VTJ3 777 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TMEM184AQ6ZMB5 413 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 LGI2Q8N0V4 545 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 ENOX1Q8TC92 643 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CYP3A43Q9HB55 503 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 PSD3Q9NYI0 1048 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DEC1Q9P2X7 70 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DNMT3LQ9UJW3 386 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 C2orf16Q68DN1 1984 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 GOLGA8TH3BQL2 631 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 AXIN1O15169 862 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TBL1XO60907 577 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TROVE2P10155 538 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CASP14P31944 242 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 PPP1R2P41236 205 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SULT1E1P49888 294 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CDH18Q13634 790 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 MAP7Q14244 749 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DHCR24Q15392 516 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TAF11Q15544 211 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 UAP1L1Q3KQV9 507 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 LRRC73Q5JTD7 316 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 PRSS36Q5K4E3 855 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 LINGO4Q6UY18 593 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 BZW1Q7L1Q6 419 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 SCD5Q86SK9 330 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DHX40Q8IX18 779 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 PPFIBP2Q8ND30 876 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TMA16Q96EY4 203 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 FUBP3Q96I24 572 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 HNRNPABQ99729 332 aaKnown RBP8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 CCT7Q99832 543 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 P2RY13Q9BPV8 354 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 FSCN3Q9NQT6 498 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 TAS2R14Q9NYV8 317 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 ADAM22Q9P0K1 906 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 USP18Q9UMW8 372 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 DUSP12Q9UNI6 340 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms