RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CELF3Q5SZQ8 465 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 B3GNT6Q6ZMB0 384 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 FBXW8Q8N3Y1 598 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 EDEM1Q92611 657 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 VPS50Q96JG6 964 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 CCDC167Q9P0B6 97 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 LRRC42Q9Y546 428 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 PKD1L3Q7Z443 1732 aa8.59□□□□□ -1.03
LIMCH1-216ENST00000512820 C16orf96A6NNT2 1141 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 HDAC3O15379 428 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TMCC1O94876 653 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 IVDP26440 423 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ETFBP38117 255 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 GRIA4P48058 902 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 FUT11Q495W5 492 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 GPRC5AQ8NFJ5 357 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 RIN3Q8TB24 985 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 B3GNT5Q9BYG0 378 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 NIFKQ9BYG3 293 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 COG4Q9H9E3 785 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 AKAP11Q9UKA4 1901 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ZMYND8Q9ULU4 1186 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 AP4S1Q9Y587 144 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 MAFBQ9Y5Q3 323 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ADGRA2Q96PE1 1338 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TMEM114B3SHH9 223 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 MRASO14807 208 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ALBP02768 609 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 CTSHP09668 335 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TPSB2P20231 275 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 CRABP2P29373 138 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 XIAPP98170 497 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TPSAB1Q15661 275 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TBCELQ5QJ74 424 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 FAM182AQ5T1J6 154 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 UNC93AQ86WB7 457 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 KIAA0319LQ8IZA0 1049 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 GORASP1Q9BQQ3 440 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ACE2Q9BYF1 805 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 BRD8Q9H0E9 1235 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 CDH19Q9H159 772 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 SETD4Q9NVD3 440 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 HACD3Q9P035 362 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 C6orf203Q9P0P8 240 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 NENFQ9UMX5 172 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF541Q9H0D2 1346 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TYW5A2RUC4 315 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TYROBPO43914 113 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 PEX1O43933 1283 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 YBX3P16989 372 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 PIK3R1P27986 724 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 CAPRIN1Q14444 709 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 LIN52Q52LA3 116 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 PPM1JQ5JR12 505 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 VWA5B1Q5TIE3 1220 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF470Q6ECI4 717 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC27A1Q6PCB7 646 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TRMT10BQ6PF06 316 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 LCLAT1Q6UWP7 414 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 DHFR2Q86XF0 187 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 C1orf127Q8N9H9 656 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF555Q8NEP9 628 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 RP9Q8TA86 221 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 RCN3Q96D15 328 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 CDH22Q9UJ99 828 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 MYRFQ9Y2G1 1151 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TRPM3Q9HCF6 1732 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 COL14A1Q05707 1796 aaKnown RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 UGT1A9O60656 530 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 RHOBTB1O94844 696 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 KLF10Q13118 480 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TSTA3Q13630 321 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 MOGSQ13724 837 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 GRIK4Q16099 956 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 PQLC1Q8N2U9 271 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 WDR60Q8WVS4 1066 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 FAM136AQ96C01 138 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 P2RY11Q96G91 374 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 MROH8Q9H579 483 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 UGT1A7Q9HAW7 530 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 UGT1A10Q9HAW8 530 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 UGT1A8Q9HAW9 530 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 RBM22Q9NW64 420 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 COPG2Q9UBF2 871 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 TJP2Q9UDY2 1190 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 RAP2CQ9Y3L5 183 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 ALS2Q96Q42 1657 aa8.58□□□□□ -1.04
LIMCH1-216ENST00000512820 CAPN8A6NHC0 703 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 HMBSP08397 361 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CSH1P0DML2 217 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CSH2P0DML3 217 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF23P17027 643 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 NOS2P35228 1153 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 MSX2P35548 267 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PLK1P53350 603 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ZBTB17Q13105 803 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 RBM44Q6ZP01 1051 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ANKRD13AQ8IZ07 590 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 WNT8BQ93098 351 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms