RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 CLIC5Q9NZA1 410 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 UBP1Q9NZI7 540 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 ARHGAP26Q9UNA1 814 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 TSPAN1O60635 241 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 PTPN9P43378 593 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 SULT1E1P49888 294 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 PKNOX1P55347 436 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 ACAD11Q709F0 780 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 SLC26A9Q7LBE3 791 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 ZFAND2BQ8WV99 257 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 FAM49AQ9H0Q0 323 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 KLK14Q9P0G3 267 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 MORF4L1Q9UBU8 362 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 INPP5FQ9Y2H2 1132 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 AK5Q9Y6K8 562 aa9.48□□□□□ -0.89
LIMCH1-215ENST00000512632 EPHA3P29320 983 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 GLRBP48167 497 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CBLBQ13191 982 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 PDK3Q15120 406 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SH3D19Q5HYK7 790 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 FSTL4Q6MZW2 842 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SNX32Q86XE0 403 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SPNS2Q8IVW8 549 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 FBXW8Q8N3Y1 598 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 NMD3Q96D46 503 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CENPKQ9BS16 269 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 GATA5Q9BWX5 397 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 ELP3Q9H9T3 547 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 C2P06681 752 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MLNP12872 115 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 AKAP5P24588 427 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MPSTP25325 297 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 GARSP41250 739 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CERCAMQ5T4B2 595 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 NXNQ6DKJ4 435 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 ADGRG6Q86SQ4 1221 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 RNF139Q8WU17 664 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 AFG1LQ8WV93 481 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 USP13Q92995 863 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MARK4Q96L34 752 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 DNAJC28Q9NX36 388 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 LGALS2P05162 132 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 ATP5BP06576 529 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 HARS2P49590 506 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 NDUFV1P49821 464 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 TMEM198Q66K66 360 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MOB2Q70IA6 237 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CYS1Q717R9 158 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SATL1Q86VE3 508 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 TDRD5Q8NAT2 981 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 ICA1LQ8NDH6 482 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CDRT15Q96T59 188 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 PSME4Q14997 1843 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 TRIP11Q15643 1979 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 RTN3O95197 1032 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SETSIPP0DME0 302 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 ENO3P13929 434 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SLC26A2P50443 739 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MRPS22P82650 360 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 FOLH1Q04609 750 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 STXBP5Q5T5C0 1151 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 FBXL19Q6PCT2 694 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 OLFM3Q96PB7 478 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MPHOSPH6Q99547 160 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 EIF2AQ9BY44 585 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 NUF2Q9BZD4 464 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CDH19Q9H159 772 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 GOLGA2P5Q9HBQ8 144 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 TCF7L2Q9NQB0 619 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 SLC39A10Q9ULF5 831 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 PCDHGB4Q9UN71 923 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 DTNAQ9Y4J8 743 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 PCDHB12Q9Y5F1 795 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 PCDHGB5Q9Y5G0 923 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CDY2AQ9Y6F7 541 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 CDY1Q9Y6F8 540 aa9.47□□□□□ -0.89
LIMCH1-215ENST00000512632 MGAMO43451 1857 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 MYOCOSA0A1B0GUC4 107 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 M0QYT0 321 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 CLDN5O00501 218 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 TCN1P20061 433 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 SPRP35270 261 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 GNL1P36915 607 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 SNX16P57768 344 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 DEUP1Q05D60 604 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 ADIGQ0VDE8 80 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 HNRNPDQ14103 355 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 TTLL4Q14679 1199 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 FSCBQ5H9T9 825 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 PIGZQ86VD9 579 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 ANKRD52Q8NB46 1076 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 CENPIQ92674 756 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 SIKE1Q9BRV8 207 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 BFARQ9NZS9 450 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 CSADQ9Y600 493 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 MRPL42Q9Y6G3 142 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 CCDC160A6NGH7 325 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 STX16-NPEPL1H3BU86 382 aa9.46□□□□□ -0.89
LIMCH1-215ENST00000512632 PHGDHO43175 533 aaKnown RBP9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms