RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CYP2A6P11509 494 aaPredicted RBP4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 LYL1P12980 280 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 PKMP14618 531 aaKnown RBP4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TACR3P29371 465 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 ELF1P32519 619 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 IDUAP35475 653 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 LIFRP42702 1097 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 RPS6KA3P51812 740 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 OAZ1P54368 228 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 ELLP55199 621 aaPredicted RBP4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TUBA4AP68366 448 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 B4GALNT1Q00973 533 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 COL10A1Q03692 680 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TBL3Q12788 808 aaKnown RBP4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 PROSER3Q2NL68 480 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 MTFR2Q6P444 385 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 DHRS13Q6UX07 377 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 LRRC8DQ7L1W4 858 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TFAP2DQ7Z6R9 452 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TMEM200AQ86VY9 491 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TSPYL6Q8N831 410 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 PIGKQ92643 395 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 ATP2A3Q93084 1043 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 CHFRQ96EP1 664 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 MASTLQ96GX5 879 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 AGAP2Q99490 1192 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 HDHD5Q9BXW7 423 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TRIM31Q9BZY9 425 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 STN1Q9H668 368 aaKnown RBP4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 JMJD4Q9H9V9 463 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 ERVK-5Q9HDB9 667 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 PNMA2Q9UL42 364 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 TBX20Q9UMR3 447 aa4.48□□□□□ -1.69
HMGB1P28-201ENST00000507778 AOX1Q06278 1338 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 EMSYQ7Z589 1322 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 MCIDASD6RGH6 385 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 RRHO14718 337 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 CCNT1O60563 726 aaKnown RBP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 GUCY1B2O75343 617 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 SGPL1O95470 568 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 METTL18O95568 372 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 HNRNPA1P09651 372 aaKnown RBP eCLIP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 CYP4B1P13584 511 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 AKR1A1P14550 325 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 ARSAP15289 507 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 AVPR2P30518 371 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 KRT9P35527 623 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 PSMC2P35998 433 aaKnown RBP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 MVDP53602 400 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 ADPRHP54922 357 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 TMEM119Q4V9L6 283 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 NAA35Q5VZE5 725 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 RHPN2Q8IUC4 686 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 SCN4BQ8IWT1 228 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 VPS52Q8N1B4 723 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 TCP11L2Q8N4U5 519 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 FAM98AQ8NCA5 519 aaKnown RBP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 SH3KBP1Q96B97 665 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 EFHD1Q9BUP0 239 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 GATA5Q9BWX5 397 aaPredicted RBP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 TAOK3Q9H2K8 898 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 ZHX3Q9H4I2 956 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 RIOX1Q9H6W3 641 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 TLR8Q9NR97 1041 aaKnown RBP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 CNOT7Q9UIV1 285 aaKnown RBP4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 CD207Q9UJ71 328 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 ARHGAP26Q9UNA1 814 aa4.47□□□□□ -1.69
HMGB1P28-201ENST00000507778 LRRC3CA6NJW4 275 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 SH2D7A6NKC9 451 aaPredicted RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 SYN3O14994 580 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 USP12O75317 370 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ATP1A3P13637 1013 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 TNFAIP3P21580 790 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 PRKCHP24723 683 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 GSTM2P28161 218 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 NR1H2P55055 460 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ARHGAP8P85298 464 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 MPP1Q00013 466 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 TFF2Q03403 129 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 MTA1Q13330 715 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 SEC23BQ15437 767 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 NFIL3Q16649 462 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 GXYLT1Q4G148 440 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 FBXO42Q6P3S6 717 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF474Q6S9Z5 364 aaPredicted RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF813Q6ZN06 617 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 RBM44Q6ZP01 1051 aaKnown RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 MAATS1Q7Z4T9 603 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 MDGA2Q7Z553 956 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 GALNT7Q86SF2 657 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 BRSK2Q8IWQ3 736 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 EXD3Q8N9H8 876 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 BOLLQ8N9W6 283 aaKnown RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 FAM47BQ8NA70 645 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 PCYOX1LQ8NBM8 494 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 PPHLN1Q8NEY8 458 aaKnown RBP4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ZNF398Q8TD17 642 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 ST8SIA4Q92187 359 aa4.46□□□□□ -1.7
HMGB1P28-201ENST00000507778 KAT2BQ92831 832 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms