RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 ADAM33Q9BZ11 813 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 PABPC3Q9H361 631 aaKnown RBP14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 CYTH4Q9UIA0 394 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 EPG5Q9HCE0 2579 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 MUC22E2RYF6 1773 aaPredicted RBP14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 LRRC72A6NJI9 287 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 DAB1O75553 588 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 ADH1BP00325 375 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 TPM2P07951 284 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 ACSL1P33121 698 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 ELAVL3Q14576 367 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 BRMS1LQ5PSV4 323 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 UNQ6494/PRO21346Q6UXR6 183 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 FAM124AQ86V42 546 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 CACUL1Q86Y37 369 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 CFAP52Q8N1V2 620 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 WDTC1Q8N5D0 677 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 ZNF366Q8N895 744 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 C1orf216Q8TAB5 229 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 GANCQ8TET4 914 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 SNX19Q92543 992 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 MYO19Q96H55 970 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 MRGPRX3Q96LB0 322 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 CDC6Q99741 560 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 PRMT1Q99873 361 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 FBXL12Q9NXK8 326 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 ADAMTS1Q9UHI8 967 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 INTS6Q9UL03 887 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 WASF3Q9UPY6 502 aa14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 APOBEC2Q9Y235 224 aaKnown RBP14.89□□□□□ -0.03
HMGCS1-203ENST00000507004 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 FOXN3O00409 490 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 FLRT2O43155 660 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 SIN3BO75182 1162 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 CLDN11O75508 207 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 LSM8O95777 96 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 C5AR1P21730 350 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 CDH5P33151 784 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 NUDT1P36639 197 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 ZNF177Q13360 481 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 TRIP6Q15654 476 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 CST6Q15828 149 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 INAVAQ3KP66 663 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 FSCBQ5H9T9 825 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 FAM46CQ5VWP2 391 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 KIAA0895LQ68EN5 471 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 OLFML1Q6UWY5 402 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 CLEC17AQ6ZS10 378 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 GLRX5Q86SX6 157 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 NAXDQ8IW45 347 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 CCAR2Q8N163 923 aaKnown RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 PGAP3Q96FM1 320 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 RPRD1AQ96P16 312 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 OMDQ99983 421 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 C6orf106Q9H6K1 298 aaPredicted RBP14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 GAREM1Q9H706 876 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 SIX2Q9NPC8 291 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 ACP6Q9NPH0 428 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 FSCN3Q9NQT6 498 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 TM7SF3Q9NS93 570 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 SLC25A13Q9UJS0 675 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 MSRB2Q9Y3D2 182 aa14.88□□□□□ -0.03
HMGCS1-203ENST00000507004 SLC7A4O43246 635 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 CLCN1P35523 988 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 ANP32AP39687 249 aaKnown RBP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 RACK1P63244 317 aaKnown RBP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 CCDC15Q0P6D6 951 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 DPCR1Q3MIW9 517 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 C5orf22Q49AR2 442 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 SLC45A4Q5BKX6 768 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 C9orf64Q5T6V5 341 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 FAM183BPQ6ZVS7 135 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 SLC47A2Q86VL8 602 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 ZNF677Q86XU0 584 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 PASD1Q8IV76 773 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 DHX40Q8IX18 779 aaKnown RBP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 KDF1Q8NAX2 398 aaPredicted RBP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 OR2T34Q8NGX1 318 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 BIRC7Q96CA5 298 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 C18orf8Q96DM3 657 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 SPAG5Q96R06 1193 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 SCNM1Q9BWG6 230 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 KDM4CQ9H3R0 1056 aa14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 XPO7Q9UIA9 1087 aaKnown RBP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 MAP1BP46821 2468 aaKnown RBP14.87□□□□□ -0.03
HMGCS1-203ENST00000507004 ADAMTS9Q9P2N4 1935 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 SPAARA0A1B0GVQ0 90 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 A0A1W2PPC4 97 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 FAM221BA6H8Z2 402 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 M0QYT0 321 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 PES1O00541 588 aaKnown RBP14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 ALOX15BO15296 676 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 YKT6O15498 198 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 SH3BP5O60239 455 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 FSBPO95073 299 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 CYP11B1P15538 503 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 GOT1P17174 413 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 SLC8A1P32418 973 aa14.86□□□□□ -0.03
HMGCS1-203ENST00000507004 GABRB2P47870 512 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms