RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ZBED1O96006 694 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3HP0C7X1 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 GIMD1P0DJR0 217 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 CTSOP43234 321 aaPredicted RBP17.09■□□□□ 0.33
VIM-208ENST00000497849 PKP1Q13835 747 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 FAM133BQ5BKY9 247 aaKnown RBP17.09■□□□□ 0.33
VIM-208ENST00000497849 COLEC12Q5KU26 742 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3GQ6DHY5 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3CQ6IPX1 549 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 SLC9A9Q8IVB4 645 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TBC1D3Q8IZP1 549 aaPredicted RBP17.09■□□□□ 0.33
VIM-208ENST00000497849 KDM1BQ8NB78 822 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 OR4C6Q8NH72 309 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 FIBINQ8TAL6 211 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TMC2Q8TDI7 906 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 EDEM1Q92611 657 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 DHX58Q96C10 678 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 CAAP1Q9H8G2 361 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 THSD1Q9NS62 852 aa17.09■□□□□ 0.33
VIM-208ENST00000497849 TULP2O00295 520 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 IKBKBO14920 756 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 ASLP04424 464 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 CKMT1AP12532 417 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 MYF5P13349 255 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 PDCP20941 246 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 C5AR1P21730 350 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 DGKAP23743 735 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 DRD3P35462 400 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 OVGP1Q12889 678 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 IGF2-ASQ6U949 168 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 TMC6Q7Z403 805 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 PRPF39Q86UA1 669 aaKnown RBP17.08■□□□□ 0.32
VIM-208ENST00000497849 MFN1Q8IWA4 741 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 STK40Q8N2I9 435 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 EXD3Q8N9H8 876 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 GOLGA5Q8TBA6 731 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 TMEM174Q8WUU8 243 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 FAM131CQ96AQ9 280 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 HEXIM2Q96MH2 286 aaKnown RBP17.08■□□□□ 0.32
VIM-208ENST00000497849 NIF3L1Q9GZT8 377 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 BLZF1Q9H2G9 400 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 CYTH4Q9UIA0 394 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 SLCO3A1Q9UIG8 710 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 ERVW-1Q9UQF0 538 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 CA5BQ9Y2D0 317 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 TEX15Q9BXT5 2789 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 AHCTF1Q8WYP5 2266 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 KIF26BQ2KJY2 2108 aa17.08■□□□□ 0.32
VIM-208ENST00000497849 TLN1Q9Y490 2541 aaKnown RBP17.07■□□□□ 0.32
VIM-208ENST00000497849 ITIH6Q6UXX5 1313 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 EDDM13A0A1B0GTR0 161 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 TERTO14746 1132 aaKnown RBP17.07■□□□□ 0.32
VIM-208ENST00000497849 MAGEC1O60732 1142 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 MAT2AP31153 395 aaKnown RBP17.07■□□□□ 0.32
VIM-208ENST00000497849 METAP1P53582 386 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 NFATC3Q12968 1075 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 BSPRYQ5W0U4 402 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.07■□□□□ 0.32
VIM-208ENST00000497849 MMS22LQ6ZRQ5 1243 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 SLC4A11Q8NBS3 891 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 TAS1R2Q8TE23 839 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 PTPRN2Q92932 1015 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 MYEOVQ96EZ4 313 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 PRICKLE1Q96MT3 831 aaPredicted RBP17.07■□□□□ 0.32
VIM-208ENST00000497849 IRX2Q9BZI1 471 aaPredicted RBP17.07■□□□□ 0.32
VIM-208ENST00000497849 STIM2Q9P246 746 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 SATB2Q9UPW6 733 aa17.07■□□□□ 0.32
VIM-208ENST00000497849 LY6G6EA0A0G2JKS1 128 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 YJEFN3A6XGL0 299 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 E7ENQ6 273 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 FFAR2O15552 330 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 LZTS3O60299 673 aaPredicted RBP17.06■□□□□ 0.32
VIM-208ENST00000497849 ADH1BP00325 375 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 IGLV3-27P01718 113 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 MZF1P28698 734 aaPredicted RBP17.06■□□□□ 0.32
VIM-208ENST00000497849 STAT4Q14765 748 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 FSCBQ5H9T9 825 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 C3orf38Q5JPI3 329 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 PITRM1Q5JRX3 1037 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 ARHGAP17Q68EM7 881 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 NADSYN1Q6IA69 706 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 ZNF557Q8N988 423 aaPredicted RBP17.06■□□□□ 0.32
VIM-208ENST00000497849 ANKRD52Q8NB46 1076 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 RNF139Q8WU17 664 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 SLC46A1Q96NT5 459 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 IMPG2Q9BZV3 1241 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 OSBPL2Q9H1P3 480 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 DMTF1Q9Y222 760 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 U3KQA8 63 aa17.06■□□□□ 0.32
VIM-208ENST00000497849 IRAK2O43187 625 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 RTN2O75298 545 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 IL1BP01584 269 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 GP1BAP07359 652 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 SRPRAP08240 638 aaKnown RBP17.05■□□□□ 0.32
VIM-208ENST00000497849 RAD23BP54727 409 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 RPS24P62847 133 aaKnown RBP17.05■□□□□ 0.32
VIM-208ENST00000497849 ISXQ2M1V0 245 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 CCDC81Q6ZN84 652 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 IQUBQ8NA54 791 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 PRR11Q96HE9 360 aaPredicted RBP17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms