RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 HIBCHQ6NVY1 386 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 SCAMP5Q8TAC9 235 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 TMA16Q96EY4 203 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 RHOBTB2Q9BYZ6 727 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 PIGVQ9NUD9 493 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 DZANK1Q9NVP4 752 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 PPARGC1AQ9UBK2 798 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 SLC25A13Q9UJS0 675 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 VANGL2Q9ULK5 521 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 NOVA2Q9UNW9 492 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 GOLGA6L7A0A1B0GV03 622 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 SOBPA7XYQ1 873 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 TRDMT1O14717 391 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 RIPK2O43353 540 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 ITGB1P05556 798 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 XPAP23025 273 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 PAPOLAP51003 745 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 FYB2Q5VWT5 728 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 TTC27Q6P3X3 843 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 PAQR9Q6ZVX9 377 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 ZNF276Q8N554 614 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 AZIN2Q96A70 460 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 TMEM209Q96SK2 561 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 MAGEH1Q9H213 219 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 CXCL16Q9H2A7 254 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 PRDM12Q9H4Q4 367 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 R3HDM2Q9Y2K5 976 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 BEST1O76090 585 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 LRIG2O94898 1065 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 JCHAINP01591 159 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 EZRP15311 586 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 PDE1BQ01064 536 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 MPP3Q13368 585 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 SEPT6Q14141 434 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 OASLQ15646 514 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 MPPE1Q53F39 396 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 NPNTQ6UXI9 565 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 CAPN12Q6ZSI9 719 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 CHST9Q7L1S5 443 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 RYBPQ8N488 228 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 UHMK1Q8TAS1 419 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 SEC14L1Q92503 715 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 HDAC11Q96DB2 347 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 MTBPQ96DY7 904 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 ZNF599Q96NL3 588 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 PAIP2Q9BPZ3 127 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 TTLL2Q9BWV7 592 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 DNAJC17Q9NVM6 304 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 RBM22Q9NW64 420 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP54-215ENST00000497106 ZMYND8Q9ULU4 1186 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 THSD7BQ9C0I4 1608 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 IFNAR2P48551 515 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 ST8SIA6P61647 398 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 SMAD3P84022 425 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 HFE2Q6ZVN8 426 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 DNAJB7Q7Z6W7 309 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 RASSF3Q86WH2 238 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 SPATS2Q86XZ4 545 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 AFAP1L2Q8N4X5 818 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 NDRG1Q92597 394 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 XPO6Q96QU8 1125 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 PEBP4Q96S96 227 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 RTP3Q9BQQ7 232 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 CORO1BQ9BR76 489 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 VPS45Q9NRW7 570 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 TMLHEQ9NVH6 421 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 IGSF9Q9P2J2 1179 aa8.58□□□□□ -1.04
USP54-215ENST00000497106 UBA2Q9UBT2 640 aaPredicted RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.58□□□□□ -1.04
USP54-215ENST00000497106 A0A1B0GVM2 712 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 TCAF2A6NFQ2 919 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 MFSD11O43934 449 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 C1RP00736 705 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 PECAM1P16284 738 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 PGAM1P18669 254 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 AFF1P51825 1210 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 PPP2R2AP63151 447 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 GPM6BQ13491 265 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 TAZQ16635 292 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 SPANXN3Q5MJ09 141 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CPLX4Q7Z7G2 160 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 LRRTM3Q86VH5 581 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 ZMIZ2Q8NF64 920 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 OLIG1Q8TAK6 271 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CCDC110Q8TBZ0 833 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 C2orf49Q9BVC5 232 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 POLR1EQ9GZS1 481 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 INTS9Q9NV88 658 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 FAM153AQ9UHL3 310 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 TCRBV7S2A1N4TA0A589 114 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 MMP13P45452 471 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 PPIDQ08752 370 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 RFTN1Q14699 578 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 NCBP2-AS2Q69YL0 99 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 B4GALNT4Q76KP1 1039 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CARNMT1Q8N4J0 409 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 GSDMBQ8TAX9 411 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 DDI1Q8WTU0 396 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CASP10Q92851 521 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 MRRFQ96E11 262 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms