RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 EPN2O95208 641 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 TOMM40O96008 361 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 CRYABP02511 175 aaKnown RBP6.33□□□□□ -1.4
SF3B1-212ENST00000496458 FGF2P09038 288 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 GAD2Q05329 585 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 PRTGQ2VWP7 1150 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 ARL13AQ5H913 290 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-212ENST00000496458 LIN54Q6MZP7 749 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 KLHL17Q6TDP4 642 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 MDGA2Q7Z553 956 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 MYLK4Q86YV6 388 aaPredicted RBP6.33□□□□□ -1.4
SF3B1-212ENST00000496458 POF1BQ8WVV4 589 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 KAT2AQ92830 837 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 RMDN3Q96TC7 470 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 EBF3Q9H4W6 596 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 HERC5Q9UII4 1024 aaKnown RBP6.33□□□□□ -1.4
SF3B1-212ENST00000496458 ANAPC4Q9UJX5 808 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 DAPP1Q9UN19 280 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 LZTS1Q9Y250 596 aa6.33□□□□□ -1.4
SF3B1-212ENST00000496458 EFCAB8A8MWE9 144 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 CHRNB1P11230 501 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 SERPINF1P36955 418 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 PIK3CD-AS1Q5SR53 167 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 C10orf76Q5T2E6 689 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 NUGGCQ68CJ6 796 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 TTLL5Q6EMB2 1281 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 NFRKBQ6P4R8 1299 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 RTL10Q7L3V2 364 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 RAB11FIP2Q7L804 512 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 SLC44A2Q8IWA5 706 aaPredicted RBP6.32□□□□□ -1.4
SF3B1-212ENST00000496458 SPICE1Q8N0Z3 855 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 TMEM199Q8N511 208 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 IP6K1Q92551 441 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 SLC39A13Q96H72 371 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 CLMNQ96JQ2 1002 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 WDR83Q9BRX9 315 aaKnown RBP6.32□□□□□ -1.4
SF3B1-212ENST00000496458 ELAC1Q9H777 363 aaKnown RBP6.32□□□□□ -1.4
SF3B1-212ENST00000496458 SEPSECSQ9HD40 501 aaKnown RBP6.32□□□□□ -1.4
SF3B1-212ENST00000496458 TXNRD2Q9NNW7 524 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 DACT1Q9NYF0 836 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 TAGLN3Q9UI15 199 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 FBXO4Q9UKT5 387 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 TNFSF13BQ9Y275 285 aa6.32□□□□□ -1.4
SF3B1-212ENST00000496458 MSI1O43347 362 aaKnown RBP6.31□□□□□ -1.4
SF3B1-212ENST00000496458 ATG13O75143 517 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 RCAN1P53805 252 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 PNLIPRP1P54315 467 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 FOXG1P55316 489 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-212ENST00000496458 AP2B1P63010 937 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 GALNT3Q14435 633 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 RPS6KA2Q15349 733 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 SULT6B1Q6IMI4 303 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 CCDC117Q8IWD4 279 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-212ENST00000496458 SCAMP5Q8TAC9 235 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 PRDM8Q9NQV8 689 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 PCDHA10Q9Y5I2 948 aa6.31□□□□□ -1.4
SF3B1-212ENST00000496458 MCIDASD6RGH6 385 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 INSIG1O15503 277 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 HEXIM1O94992 359 aaKnown RBP6.3□□□□□ -1.4
SF3B1-212ENST00000496458 OAZ2O95190 189 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 CSTBP04080 98 aaKnown RBP6.3□□□□□ -1.4
SF3B1-212ENST00000496458 SNHG28P0DPA3 235 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 POLE2P56282 527 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 PPATQ06203 517 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 MAPK7Q13164 816 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 BLMHQ13867 455 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 ODF3L2Q3SX64 289 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 DAB2IPQ5VWQ8 1189 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 HMBOX1Q6NT76 420 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 KIAA1324Q6UXG2 1013 aaKnown RBP6.3□□□□□ -1.4
SF3B1-212ENST00000496458 TRAPPC11Q7Z392 1133 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 SAMD3Q8N6K7 520 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 CENPIQ92674 756 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-212ENST00000496458 PABPC3Q9H361 631 aaKnown RBP6.3□□□□□ -1.4
SF3B1-212ENST00000496458 SPAG4Q9NPE6 437 aa6.3□□□□□ -1.4
SF3B1-212ENST00000496458 C19orf53Q9UNZ5 99 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-212ENST00000496458 FOXO6A8MYZ6 492 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 KCNAB3O43448 404 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 ADPRHP54922 357 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 CHAF1AQ13111 956 aaPredicted RBP6.29□□□□□ -1.4
SF3B1-212ENST00000496458 TRIM14Q14142 442 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 PTGR1Q14914 329 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 TBRG1Q3YBR2 411 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 GALNTL6Q49A17 601 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 TTC39AQ5SRH9 613 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 LCE1AQ5T7P2 110 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 TTC22Q5TAA0 569 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 CPT1BQ92523 772 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 C3orf49Q96BT1 292 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 IL21RQ9HBE5 538 aa6.29□□□□□ -1.4
SF3B1-212ENST00000496458 CACNA1IQ9P0X4 2223 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 NEURL1O76050 574 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 ITGB6P18564 788 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 SERPINA4P29622 427 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 PCP4P48539 62 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 PMPCAQ10713 525 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 CCDC38Q502W7 563 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 ASPHD1Q5U4P2 390 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 ERAP2Q6P179 960 aa6.28□□□□□ -1.4
SF3B1-212ENST00000496458 ZNF549Q6P9A3 640 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms