RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RTL3Q8N8U3 475 aaKnown RBP19.94■□□□□ 0.78
USP39-218ENST00000493829 TTC8Q8TAM2 541 aa19.94■□□□□ 0.78
USP39-218ENST00000493829 LRRN4Q8WUT4 740 aa19.94■□□□□ 0.78
USP39-218ENST00000493829 NR2E1Q9Y466 385 aa19.94■□□□□ 0.78
USP39-218ENST00000493829 CYBBP04839 570 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 MPPE1Q53F39 396 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 B4GALNT4Q76KP1 1039 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 NLRP14Q86W24 1093 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 MFSD6LQ8IWD5 586 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 C1orf54Q8WWF1 131 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 E2F7Q96AV8 911 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 BBS2Q9BXC9 721 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 SPHK2Q9NRA0 654 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 COL4A3Q01955 1670 aa19.93■□□□□ 0.78
USP39-218ENST00000493829 DOCK4Q8N1I0 1966 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 GFRA2O00451 464 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 KRIT1O00522 736 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 ECI2O75521 394 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 CYP17A1P05093 508 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 PSMC3P17980 439 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 HOXD9P28356 352 aaPredicted RBP19.92■□□□□ 0.78
USP39-218ENST00000493829 OR1E1P30953 314 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 GDI1P31150 447 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 WHAMMP3Q1A5X7 153 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 TTC39BQ5VTQ0 682 aaPredicted RBP19.92■□□□□ 0.78
USP39-218ENST00000493829 IRF7Q92985 503 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 NAP1L3Q99457 506 aaPredicted RBP19.92■□□□□ 0.78
USP39-218ENST00000493829 TMEM248Q9NWD8 314 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 LIMD1Q9UGP4 676 aa19.92■□□□□ 0.78
USP39-218ENST00000493829 TTC7AQ9ULT0 858 aaPredicted RBP19.92■□□□□ 0.78
USP39-218ENST00000493829 A0A1B0GVM2 712 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 TCAF2A6NFQ2 919 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ANHXE9PGG2 379 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 OTUD4Q01804 1114 aaKnown RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 C2orf54Q08AI8 447 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 FCHO2Q0JRZ9 810 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 SNX1Q13596 522 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 CDH18Q13634 790 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 SIX1Q15475 284 aaPredicted RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 C5orf22Q49AR2 442 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 FYB2Q5VWT5 728 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 WFDC5Q8TCV5 224 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 P3H4Q92791 437 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 OTUB2Q96DC9 234 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 EFR3BQ9Y2G0 817 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 H0Y626 953 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 APOC4-APOC2K7ER74 178 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 DFFAO00273 331 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 LUC7L3O95232 432 aaKnown RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 APOC2P02655 101 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ASGR2P07307 311 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ZFXP17010 805 aaPredicted RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 TGM2P21980 687 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 CDH4P55283 916 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 CKAP4Q07065 602 aaKnown RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 DHCR24Q15392 516 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 KCTD19Q17RG1 926 aaPredicted RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 RHBDF2Q6PJF5 856 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 MFN1Q8IWA4 741 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ADGRG2Q8IZP9 1017 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 NAT16Q8N8M0 369 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ACTL9Q8TC94 416 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 DEPDC1BQ8WUY9 529 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ATP2A3Q93084 1043 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 TRMT61BQ9BVS5 477 aaKnown RBP19.91■□□□□ 0.78
USP39-218ENST00000493829 HPS4Q9NQG7 708 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 DTLQ9NZJ0 730 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ZNF212Q9UDV6 495 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 CLEC4EQ9ULY5 219 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 FAM50BQ9Y247 325 aa19.91■□□□□ 0.78
USP39-218ENST00000493829 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP19.9■□□□□ 0.78
USP39-218ENST00000493829 OTOL1A6NHN0 477 aaPredicted RBP19.9■□□□□ 0.78
USP39-218ENST00000493829 CLDN11O75508 207 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 NFATC1O95644 943 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 ADH5P11766 374 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 TYRP14679 529 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 SLC10A2Q12908 348 aaPredicted RBP19.9■□□□□ 0.78
USP39-218ENST00000493829 ZNF177Q13360 481 aaPredicted RBP19.9■□□□□ 0.78
USP39-218ENST00000493829 PAFAH1B3Q15102 231 aaKnown RBP19.9■□□□□ 0.78
USP39-218ENST00000493829 PDGFRLQ15198 375 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 AAK1Q2M2I8 961 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 CHST9Q7L1S5 443 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 ZC3H18Q86VM9 953 aaKnown RBP19.9■□□□□ 0.78
USP39-218ENST00000493829 ZNF354CQ86Y25 554 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 OR52K2Q8NGK3 314 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 FAM83CQ9BQN1 747 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 CARD6Q9BX69 1037 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 KLC2Q9H0B6 622 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 C10orf88Q9H8K7 445 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 GTSE1Q9NYZ3 720 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 THEGQ9P2T0 379 aa19.9■□□□□ 0.78
USP39-218ENST00000493829 MYOFQ9NZM1 2061 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 GOLGA6L10A0A0M3HER8 536 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 ADH1CP00326 375 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 RHOCP08134 193 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 SERPINB6P35237 376 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 PUS10Q3MIT2 529 aaKnown RBP19.89■□□□□ 0.77
USP39-218ENST00000493829 FSCBQ5H9T9 825 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 PRELID2Q8N945 189 aa19.89■□□□□ 0.77
USP39-218ENST00000493829 MAIP1Q8WWC4 291 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms