RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CELF6Q96J87 481 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 AGAP3Q96P47 875 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 CFHR5Q9BXR6 569 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 STARD7Q9NQZ5 370 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 DNAJB4Q9UDY4 337 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 TRHDEQ9UKU6 1024 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 PRG3Q9Y2Y8 225 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 NUP205Q92621 2012 aa21.64■■□□□ 1.05
CCDC88B-208ENST00000492980 RASSF9O75901 435 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 CCDC15Q0P6D6 951 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 BNIP1Q12981 228 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 MROH9Q5TGP6 573 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 KCTD11Q693B1 232 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 SCN4BQ8IWT1 228 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 REM2Q8IYK8 340 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 OR52K1Q8NGK4 314 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 C10orf82Q8WW14 230 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 HAPLN3Q96S86 360 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 GPBP1L1Q9HC44 474 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 ABI2Q9NYB9 513 aaPredicted RBP21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 SFMBT1Q9UHJ3 866 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 USH1CQ9Y6N9 552 aa21.63■■□□□ 1.05
CCDC88B-208ENST00000492980 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 MSI1O43347 362 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 TRPA1O75762 1119 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 INHAP05111 366 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 SRGAP2BP0DMP2 458 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 TEX44Q53QW1 395 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 VAT1Q99536 393 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 MLPHQ9BV36 600 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 IQCGQ9H095 443 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 SIK2Q9H0K1 926 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 NMUR1Q9HB89 426 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 KANSL3Q9P2N6 904 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 SLC17A6Q9P2U8 582 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 PLLPQ9Y342 182 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 PAGE1O75459 146 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 CNTFP26441 200 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 SERPINB4P48594 390 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 ITPRIPL1Q6GPH6 555 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 RWDD4Q6NW29 188 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 TIFABQ6ZNK6 161 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 DCP1BQ8IZD4 617 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 ZSCAN18Q8TBC5 510 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 PLXNA3P51805 1871 aa21.62■■□□□ 1.05
CCDC88B-208ENST00000492980 USP12O75317 370 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 NFKB1P19838 968 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 HOXC13P31276 330 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 CCR1P32246 355 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 NCALDP61601 193 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 NAB1Q13506 487 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 ARTNQ5T4W7 220 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 MANEALQ5VSG8 457 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 CDKL2Q92772 493 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 TEKT5Q96M29 485 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 FTHL17Q9BXU8 183 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 ECT2Q9H8V3 914 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 CASS4Q9NQ75 786 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 VWA8A3KMH1 1905 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 A0A1W2PQH9 124 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 ERI2A8K979 691 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 DEFB115Q30KQ5 88 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 PACS1Q6VY07 963 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 STKLD1Q8NE28 680 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 FAM193BQ96PV7 902 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 CREBZFQ9NS37 354 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 PCMTD2Q9NV79 361 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 TMEM161AQ9NX61 479 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 BRCA2P51587 3418 aa21.61■■□□□ 1.05
CCDC88B-208ENST00000492980 TTC3P53804 2025 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 HGSO14964 777 aaPredicted RBP21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 POLBP06746 335 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 BGNP21810 368 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 COG7P83436 770 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 ZNF33AQ06730 810 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 PPP2R5DQ14738 602 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 SPANXN3Q5MJ09 141 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 SDHAF4Q5VUM1 108 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 FYB2Q5VWT5 728 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 LRRC8DQ7L1W4 858 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 ARHGAP12Q8IWW6 846 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 FUBP3Q96I24 572 aaKnown RBP eCLIP21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 SLC13A1Q9BZW2 595 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 OSER1Q9NX31 292 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 NUDT5Q9UKK9 219 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 CHKBQ9Y259 395 aa21.6■■□□□ 1.05
CCDC88B-208ENST00000492980 ARHGAP42A6NI28 874 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 ARVCFO00192 962 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 JCHAINP01591 159 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 HTR7P34969 479 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 GPR15P49685 360 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 NFE2Q16621 373 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 VARS2Q5ST30 1063 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 CES3Q6UWW8 571 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 FCRL3Q96P31 734 aaPredicted RBP21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 PGLYRP2Q96PD5 576 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 TSSK1BQ9BXA7 367 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 NPHS2Q9NP85 383 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 VANGL2Q9ULK5 521 aa21.59■■□□□ 1.05
CCDC88B-208ENST00000492980 SCML2Q9UQR0 700 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms