RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SPACA6W5XKT8 324 aa4.35□□□□□ -1.71
BRCA1-220ENST00000492859 INSRP06213 1382 aa4.35□□□□□ -1.71
BRCA1-220ENST00000492859 SENP3-EIF4A1A0A087X0R7 540 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ERICH2A1L162 156 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 PTPDC1A2A3K4 754 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 WDR91A4D1P6 747 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 HTR3EA5X5Y0 456 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 FAM86C2PA6NEL3 165 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 OR6C75A6NL08 312 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 DBX1A6NMT0 343 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MEIS3P2A8K0S8 358 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MEIS2O14770 477 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 KHNYNO15037 678 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TBX1O43435 398 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MED7O43513 233 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 PPP6R2O75170 966 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 HEXIM1O94992 359 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SPDEFO95238 335 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ITGAVP06756 1048 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 FHP07954 510 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MMP2P08253 660 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 GJA1P17302 382 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 PTAFRP25105 342 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 NMT1P30419 496 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ALDH3A1P30838 453 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 GRK5P34947 590 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 IRAK1P51617 712 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 BMXP51813 675 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 HERVK_113P62684 666 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ERVK-24P63145 666 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TNFRSF17Q02223 184 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 KIF23Q02241 960 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CBFBQ13951 182 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 E2F2Q14209 437 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 KRT31Q15323 416 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TWISTNBQ3B726 338 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 UAP1L1Q3KQV9 507 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 GPAT3Q53EU6 434 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 RARS2Q5T160 578 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 THEM4Q5T1C6 240 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ZNF658Q5TYW1 1059 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 GKAP1Q5VSY0 366 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 PRAMEF20Q5VT98 475 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 AFMIDQ63HM1 303 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 PTRHD1Q6GMV3 140 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 POTEAQ6S8J7 498 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MFSD7Q6UXD7 560 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SLC51BQ86UW2 128 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 DNAAF5Q86Y56 855 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CDKL3Q8IVW4 592 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SRRM1Q8IYB3 904 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 BBS1Q8NFJ9 593 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CMASQ8NFW8 434 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 OR14C36Q8NHC7 312 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 AKR7LQ8NHP1 331 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TEX47Q8TBZ9 253 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 FAM71BQ8TC56 605 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CCDC12Q8WUD4 166 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TGFBRAP1Q8WUH2 860 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SCFD1Q8WVM8 642 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 DNAJA4Q8WW22 397 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 FBXO32Q969P5 355 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 AZIN2Q96A70 460 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 AIDAQ96BJ3 306 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 IQCDQ96DY2 449 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 NEIL1Q96FI4 390 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TSPAN17Q96FV3 270 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ZBED3Q96IU2 234 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 EGLN2Q96KS0 407 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CEP19Q96LK0 163 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CFAP57Q96MR6 1250 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 RAB3IPQ96QF0 476 aaPredicted RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 KCNK16Q96T55 309 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CYTH2Q99418 400 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 TDRD1Q9BXT4 1180 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 DCLK3Q9C098 648 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SLC5A7Q9GZV3 580 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 DRC3Q9H069 523 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CHRDQ9H2X0 955 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MS4A5Q9H3V2 200 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 EVA1AQ9H8M9 152 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 C14orf93Q9H972 538 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 MBIPQ9NS73 344 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 RBM12Q9NTZ6 932 aaKnown RBP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.34□□□□□ -1.717e-7■□□□□ 9.9
BRCA1-220ENST00000492859 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.34□□□□□ -1.71
BRCA1-220ENST00000492859 VPS54Q9P1Q0 977 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SPASTQ9UBP0 616 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SUSD2Q9UGT4 822 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CHMP2BQ9UQN3 213 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 CHKBQ9Y259 395 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SLC12A7Q9Y666 1083 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 ANKRD30AQ9BXX3 1397 aa4.34□□□□□ -1.71
BRCA1-220ENST00000492859 SYNGAP1Q96PV0 1343 aa4.33□□□□□ -1.72
BRCA1-220ENST00000492859 A0A1W2PN81 502 aa4.33□□□□□ -1.72
BRCA1-220ENST00000492859 SMIM30A4D0T7 59 aa4.33□□□□□ -1.72
BRCA1-220ENST00000492859 ZNF716A6NP11 495 aa4.33□□□□□ -1.72
BRCA1-220ENST00000492859 IQCF5A8MTL0 148 aa4.33□□□□□ -1.72
BRCA1-220ENST00000492859 E9PI62 339 aa4.33□□□□□ -1.72
BRCA1-220ENST00000492859 WDR46O15213 610 aaKnown RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms