RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MRFAP1L1	Q96HT8	127 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	SPATA17	Q96L03	361 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	KREMEN1	Q96MU8	473 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ARID3A	Q99856	593 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	PHACTR1	Q9C0D0	580 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ELOVL4	Q9GZR5	314 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	DPEP3	Q9H4B8	488 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	GRPEL1	Q9HAV7	217 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	NEUROD4	Q9HD90	331 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	SIX2	Q9NPC8	291 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	MYO6	Q9UM54	1294 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	FHOD1	Q9Y613	1164 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	KNTC1	P50748	2209 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ITIH6	Q6UXX5	1313 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520		A0A1W2PQJ5	194 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	TBC1D3B	A6NDS4	549 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SLC9A3R1	O14745	358 aa	Predicted RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	TRIM24	O15164	1050 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SH3BP5	O60239	455 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	GFPT2	O94808	682 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ADCY5	O95622	1261 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SERPINF2	P08697	491 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	CD59	P13987	128 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	GABRG2	P18507	467 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ACO1	P21399	889 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	TNFAIP3	P21580	790 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	GRIA2	P42262	883 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	TNFRSF4	P43489	277 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	CACNA2D1	P54289	1103 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SLC7A9	P82251	487 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ZBED6	P86452	979 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF33A	Q06730	810 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SCAP	Q12770	1279 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	TAF10	Q12962	218 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	BYSL	Q13895	437 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ASIC2	Q16515	512 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	FIGN	Q5HY92	759 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	LRRC69	Q6ZNQ3	347 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	VPS36	Q86VN1	386 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	PROSER1	Q86XN7	944 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	VSTM4	Q8IW00	320 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	RGL4	Q8IZJ4	473 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF513	Q8N8E2	541 aa	Predicted RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	C12orf29	Q8N999	325 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SLC4A11	Q8NBS3	891 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SLC2A14	Q8TDB8	520 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF606	Q8WXB4	792 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SHC3	Q92529	594 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SMARCD1	Q96GM5	515 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SCARF2	Q96GP6	870 aa	Predicted RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	PCED1B	Q96HM7	432 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	NOX5	Q96PH1	765 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	HNRNPAB	Q99729	332 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	NAA15	Q9BXJ9	866 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	B3GNT5	Q9BYG0	378 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	GAN	Q9H2C0	597 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	CD93	Q9NPY3	652 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	FAM49B	Q9NUQ9	324 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	SEPT11	Q9NVA2	429 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	CALCOCO1	Q9P1Z2	691 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	CAPN11	Q9UMQ6	739 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	NME7	Q9Y5B8	376 aa		9.12	□□□□□ -0.95
USP4-213	ENST00000488520	BZW2	Q9Y6E2	419 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	NYNRIN	Q9P2P1	1898 aa	Known RBP	9.12	□□□□□ -0.95
USP4-213	ENST00000488520	AKR1B15	C9JRZ8	316 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520		F8VZ95	297 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520		H0Y626	953 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CLDN5	O00501	218 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	TRIM16	O95361	564 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	OAS1	P00973	400 aa	Known RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	IRF1	P10914	325 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CCDC130	P13994	396 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	HOXB2	P14652	356 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	PFKL	P17858	780 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CASP14	P31944	242 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	DPP6	P42658	865 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	MAP3K7CL	P57077	242 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	KLHL30	Q0D2K2	578 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	TRIP6	Q15654	476 aa	Known RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	COL28A1	Q2UY09	1125 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	ANO4	Q32M45	955 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	PLEKHG6	Q3KR16	790 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	HSF5	Q4G112	596 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	SPDYC	Q5MJ68	293 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	C10orf76	Q5T2E6	689 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	PEAR1	Q5VY43	1037 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	BTBD8	Q5XKL5	378 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	ARHGAP17	Q68EM7	881 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	SLC36A4	Q6YBV0	504 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	RAB44	Q7Z6P3	723 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF677	Q86XU0	584 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	MIB1	Q86YT6	1006 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CNGA4	Q8IV77	575 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	SLC41A1	Q8IVJ1	513 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	FAM71A	Q8IYT1	594 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	ANKRD52	Q8NB46	1076 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	MSANTD4	Q8NCY6	345 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	OR8K1	Q8NGG5	319 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CEP76	Q8TAP6	659 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	HSPA12B	Q96MM6	686 aa		9.11	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms