RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PPIDQ08752 370 aaKnown RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 IRF2BP2Q7Z5L9 587 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 B3GALNT2Q8NCR0 500 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 TBC1D10AQ9BXI6 508 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 DDX18Q9NVP1 670 aaKnown RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 SLC25A13Q9UJS0 675 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 TIMM13Q9Y5L4 95 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 GNG14A0A1W2PPG7 69 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 MEIS2O14770 477 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 TUBP50607 506 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ARMCX4Q5H9R4 360 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ANKS6Q68DC2 871 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 CLVS1Q8IUQ0 354 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 OR56A4Q8NGH8 313 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ZSCAN18Q8TBC5 510 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 MIEF2Q96C03 454 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 OPTNQ96CV9 577 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 TAS2R13Q9NYV9 303 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 DYRK1BQ9Y463 629 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 PDZK1P1A8MUH7 402 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 SMIM22K7EJ46 135 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 UBXN8O00124 270 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 RAMP2O60895 175 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ERVK-10P10266 1014 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 PSMB9P28065 219 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 MFSD4BQ5TF39 518 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ARHGAP17Q68EM7 881 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 NPNTQ6UXI9 565 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 KRCC1Q9NPI7 259 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 ARHGAP23Q9P227 1491 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 MAP3K13O43283 966 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 RPL22P35268 128 aaKnown RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 CAMK2GQ13555 558 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 EXOC3L1Q86VI1 746 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 SHC3Q92529 594 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 VTA1Q9NP79 307 aa16.76■□□□□ 0.27
COL7A1-210ENST00000487017 TLR8Q9NR97 1041 aaKnown RBP16.76■□□□□ 0.27
COL7A1-210ENST00000487017 FAM20BO75063 409 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 GPC1P35052 558 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 NCKAP1LP55160 1127 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 TBX4P57082 545 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 FRG1Q14331 258 aaKnown RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF280DQ6N043 979 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 TRAPPC12Q8WVT3 735 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 POPDC2Q9HBU9 364 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 PEX1O43933 1283 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 CYP1A1P04798 512 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF135P52742 658 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 FAM45BPQ6NSW5 357 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 BHLHE22Q8NFJ8 381 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 SH3GL2Q99962 352 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 STMN3Q9NZ72 180 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 A0A0A0MRY4 1105 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 CCDC130P13994 396 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 MRPS22P82650 360 aaKnown RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 TFAP2DQ7Z6R9 452 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 HERC6Q8IVU3 1022 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 ADAM32Q8TC27 787 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 SPATA13Q96N96 652 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 UGT2B28Q9BY64 529 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 WDR41Q9HAD4 459 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 NFKBIL1Q9UBC1 381 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 TRIM24O15164 1050 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 RAD51BO15315 384 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 TKTP29401 623 aaKnown RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 PTDSS1P48651 473 aaKnown RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 CXCL9Q07325 125 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 NCF4Q15080 339 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 ALFQ53S48 1182 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 OVOS1Q6IE37 1185 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF410Q86VK4 478 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 PHF13Q86YI8 300 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-210ENST00000487017 TMEM139Q8IV31 216 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 ZFPM1Q8IX07 1006 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 SVOPQ8N4V2 548 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 RNF145Q96MT1 663 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 SPON1Q9HCB6 807 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 GTF2A1LQ9UNN4 478 aa16.75■□□□□ 0.27
COL7A1-210ENST00000487017 PHGDHO43175 533 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 PCNAP12004 261 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF143P52747 638 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 PKNOX1P55347 436 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 BMT2Q1RMZ1 405 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ZNF284Q2VY69 593 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ERAP2Q6P179 960 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 SLC16A10Q8TF71 515 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 SEMA6AQ9H2E6 1030 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 ATRNO75882 1429 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 FSCN2O14926 492 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 KATNA1O75449 491 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 FKBP1AP62942 108 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 SERPINB11Q96P15 392 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 FBXO44Q9H4M3 255 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 TRUB2O95900 331 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 HUNKP57058 714 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 NEDD8Q15843 81 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 C15orf59Q2T9L4 293 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 PSTKQ8IV42 348 aaKnown RBP16.74■□□□□ 0.27
COL7A1-210ENST00000487017 DHRSXQ8N5I4 330 aa16.74■□□□□ 0.27
COL7A1-210ENST00000487017 TMEM161BQ8NDZ6 487 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms