RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 REXO5Q96IC2 774 aaKnown RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 ADAD1Q96M93 576 aaKnown RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 MYD88Q99836 296 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 HTATIP2Q9BUP3 242 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FRMD8Q9BZ67 464 aaPredicted RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 MAGEH1Q9H213 219 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 FZD3Q9NPG1 666 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 WWOXQ9NZC7 414 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 SLC8A2Q9UPR5 921 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 INSL5Q9Y5Q6 135 aa3.64□□□□□ -1.83
VPS50-216ENST00000484954 ZNF335Q9H4Z2 1342 aaPredicted RBP3.64□□□□□ -1.83
VPS50-216ENST00000484954 NOTCH4Q99466 2003 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 SLC38A8A6NNN8 435 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 CAND2O75155 1236 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 ALDOAP04075 364 aaKnown RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 GRK5P34947 590 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 PPM1AP35813 382 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 ZBTB16Q05516 673 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 RNASELQ05823 741 aaKnown RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 ZNF585BQ52M93 769 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 ENTPD8Q5MY95 495 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 GGT6Q6P531 493 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 LVRNQ6Q4G3 990 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 KIAA1324Q6UXG2 1013 aaKnown RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 TRAPPC11Q7Z392 1133 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 CTU1Q7Z7A3 348 aaKnown RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 OIT3Q8WWZ8 545 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 ZNF419Q96HQ0 510 aaPredicted RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 SORBS1Q9BX66 1292 aaKnown RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 MYLK2Q9H1R3 596 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 TP63Q9H3D4 680 aaPredicted RBP3.63□□□□□ -1.83
VPS50-216ENST00000484954 SFXN1Q9H9B4 322 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 ZNF304Q9HCX3 659 aa3.63□□□□□ -1.83
VPS50-216ENST00000484954 CYP3A7-CYP3A51PA0A087WV96 503 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 AGAP5A6NIR3 686 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 MDM4O15151 490 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 PRC1O43663 620 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 IFNA2P01563 188 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 MYL1P05976 194 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 NGFRP08138 427 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 CYP3A7P24462 503 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 TBXAS1P24557 533 aaPredicted RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 TNFRSF8P28908 595 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 SERPINB3P29508 390 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 SF3A3Q12874 501 aaKnown RBP eCLIP3.62□□□□□ -1.83
VPS50-216ENST00000484954 MAP9Q49MG5 647 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 CYB5R4Q7L1T6 521 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 SYTL1Q8IYJ3 562 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 RBMXL3Q8N7X1 1067 aaKnown RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 MIB2Q96AX9 1013 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 URB1-AS1Q96HZ7 61 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 CLMNQ96JQ2 1002 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 ZPBPQ9BS86 351 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 RBM38Q9H0Z9 239 aaKnown RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 SEPSECSQ9HD40 501 aaKnown RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 OBP2BQ9NPH6 170 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 SIRT3Q9NTG7 399 aaPredicted RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 GEMIN8Q9NWZ8 242 aaKnown RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 CNTN6Q9UQ52 1028 aa3.62□□□□□ -1.83
VPS50-216ENST00000484954 COPG1Q9Y678 874 aaKnown RBP3.62□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3DA0A087WVF3 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3IA0A087WXS9 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3EA0A087X179 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3KA0A087X1G2 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3BA6NDS4 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3FA6NER0 549 aaPredicted RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 C3orf70A6NLC5 250 aaPredicted RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 LGALS16A8MUM7 142 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3LB9A6J9 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 MSI1O43347 362 aaKnown RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 SLC28A2O43868 658 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3HP0C7X1 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 RFX5P48382 616 aaPredicted RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 PGGT1BP53609 377 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 ADPRHP54922 357 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 POLE2P56282 527 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 RBM6P78332 1123 aaKnown RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 PMPCAQ10713 525 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TRAF1Q13077 416 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 GALNT3Q14435 633 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 SPARCL1Q14515 664 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 STARD3Q14849 445 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 WASHC2DQ5SRD0 308 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TTC39AQ5SRH9 613 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 C10orf76Q5T2E6 689 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3GQ6DHY5 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3CQ6IPX1 549 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 KDELC2Q7Z4H8 507 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 FAM186BQ8IYM0 893 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 NRSN1Q8IZ57 195 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 TBC1D3Q8IZP1 549 aaPredicted RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 TMEM217Q8N7C4 229 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 ADPRHL1Q8NDY3 354 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 FAM110DQ8TAY7 271 aaPredicted RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 WDR60Q8WVS4 1066 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 LPAR1Q92633 364 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 CENPIQ92674 756 aaPredicted RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 TMEM41AQ96HV5 264 aa3.61□□□□□ -1.83
VPS50-216ENST00000484954 THOC3Q96J01 351 aaKnown RBP3.61□□□□□ -1.83
VPS50-216ENST00000484954 TNIP3Q96KP6 325 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms