RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 OSBPL5Q9H0X9 879 aaPredicted RBP6.63□□□□□ -1.35
USP40-213ENST00000483216 SAYSD1Q9NPB0 183 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 ELOVL5Q9NYP7 299 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 AGO2Q9UKV8 859 aaKnown RBP6.63□□□□□ -1.35
USP40-213ENST00000483216 RIPOR2Q9Y4F9 1068 aa6.63□□□□□ -1.35
USP40-213ENST00000483216 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.63□□□□□ -1.35
USP40-213ENST00000483216 ATAD2BQ9ULI0 1458 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 TRBV5-3A0A0A0MS03 114 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 HMX3A6NHT5 357 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 HNRNPRO43390 633 aaKnown RBP6.62□□□□□ -1.35
USP40-213ENST00000483216 TLX3O43711 291 aaPredicted RBP6.62□□□□□ -1.35
USP40-213ENST00000483216 FAM155BO75949 473 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 PRF1P14222 555 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 PLCD1P51178 756 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 PRKG1Q13976 671 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 TIGD6Q17RP2 521 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 KIAA1755Q5JYT7 1200 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 RRAGAQ7L523 313 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 NKAPQ8N5F7 415 aaKnown RBP6.62□□□□□ -1.35
USP40-213ENST00000483216 MPLKIPQ8TAP9 179 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 SDCCAG3Q96C92 435 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 PIGSQ96S52 555 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 TAF1DQ9H5J8 278 aaPredicted RBP6.62□□□□□ -1.35
USP40-213ENST00000483216 PDE11AQ9HCR9 933 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 BAG5Q9UL15 447 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 AFG3L2Q9Y4W6 797 aa6.62□□□□□ -1.35
USP40-213ENST00000483216 ZNF521Q96K83 1311 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 KIR2DS5A0A0G2JLQ3 304 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 FAM90A20PA6NIJ5 464 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 MCIDASD6RGH6 385 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 KIR2DS3K7RE56 304 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 IFRD1O00458 451 aaPredicted RBP6.61□□□□□ -1.35
USP40-213ENST00000483216 UGDHO60701 494 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 CYP21A2P08686 494 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 TMEM191BP0C7N4 346 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 CYP19A1P11511 503 aaPredicted RBP6.61□□□□□ -1.35
USP40-213ENST00000483216 NR4A2P43354 598 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 MTX1Q13505 466 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 LAMB3Q13751 1172 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 POSTNQ15063 836 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 GPR162Q16538 588 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 MIDNQ504T8 468 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 ISM2Q6H9L7 571 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 LRIG3Q6UXM1 1119 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 RTL10Q7L3V2 364 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 MDGA2Q7Z553 956 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 ENDOVQ8N8Q3 282 aaKnown RBP6.61□□□□□ -1.35
USP40-213ENST00000483216 SCARB1Q8WTV0 552 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 MYLK2Q9H1R3 596 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 G6PC2Q9NQR9 355 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP40-213ENST00000483216 HEY2Q9UBP5 337 aa6.61□□□□□ -1.35
USP40-213ENST00000483216 LY6G6EA0A0G2JKS1 128 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 KCNJ18B7U540 433 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 SOCS2O14508 198 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 TFRCP02786 760 aaKnown RBP6.6□□□□□ -1.35
USP40-213ENST00000483216 WNT1P04628 370 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 MCM2P49736 904 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 TWIST1Q15672 202 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 SMAD1Q15797 465 aaKnown RBP6.6□□□□□ -1.35
USP40-213ENST00000483216 C10orf76Q5T2E6 689 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 ARFGAP1Q8N6T3 406 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 PTGR2Q8N8N7 351 aaPredicted RBP6.6□□□□□ -1.35
USP40-213ENST00000483216 SPATA5Q8NB90 893 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 SLC44A5Q8NCS7 719 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 CCT6BQ92526 530 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 RUBCNQ92622 972 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 CLMNQ96JQ2 1002 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 ADAD1Q96M93 576 aaKnown RBP6.6□□□□□ -1.35
USP40-213ENST00000483216 TWSG1Q9GZX9 223 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 KCND3Q9UK17 655 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 SLC8A2Q9UPR5 921 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 DTX4Q9Y2E6 619 aa6.6□□□□□ -1.35
USP40-213ENST00000483216 DPPA5A6NC42 116 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 E7EVH7 732 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 NBNO60934 754 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 LMO1P25800 156 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 ADD2P35612 726 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 PRKAA2P54646 552 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 DLGAP5Q15398 846 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 KIAA1324Q6UXG2 1013 aaKnown RBP6.59□□□□□ -1.35
USP40-213ENST00000483216 RASGRP2Q7LDG7 609 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 THAP4Q8WY91 577 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 HMCESQ96FZ2 354 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 ZNF48Q96MX3 618 aaPredicted RBP6.59□□□□□ -1.35
USP40-213ENST00000483216 SEPSECSQ9HD40 501 aaKnown RBP6.59□□□□□ -1.35
USP40-213ENST00000483216 KIF17Q9P2E2 1029 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 RCE1Q9Y256 329 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 TNFSF13BQ9Y275 285 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 PKP3Q9Y446 797 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 HS3ST3B1Q9Y662 390 aa6.59□□□□□ -1.35
USP40-213ENST00000483216 GRM8O00222 908 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 NFATC1O95644 943 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 HOXB9P17482 250 aaPredicted RBP6.58□□□□□ -1.36
USP40-213ENST00000483216 ME1P48163 572 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 CDK18Q07002 472 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 ANO1Q5XXA6 986 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 RFX8Q6ZV50 586 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 TMEM200AQ86VY9 491 aa6.58□□□□□ -1.36
USP40-213ENST00000483216 NRACQ8N912 160 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms