RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 ZYG11BQ9C0D3 744 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 ZFP14Q9HCL3 533 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 DTLQ9NZJ0 730 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 ZNF510Q9Y2H8 683 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 NUMBLQ9Y6R0 609 aa13.49□□□□□ -0.25
CHD3-210ENST00000479080 APOL1O14791 398 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 FGF10O15520 208 aaPredicted RBP13.48□□□□□ -0.25
CHD3-210ENST00000479080 TBL1XO60907 577 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 OTUD4Q01804 1114 aaKnown RBP13.48□□□□□ -0.25
CHD3-210ENST00000479080 TNK2Q07912 1038 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 MTA1Q13330 715 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 WHAMMP3Q1A5X7 153 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 FSCBQ5H9T9 825 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 LY6G5CQ5SRR4 150 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 NAIF1Q69YI7 327 aaPredicted RBP13.48□□□□□ -0.25
CHD3-210ENST00000479080 PTCRAQ6ISU1 281 aaPredicted RBP13.48□□□□□ -0.25
CHD3-210ENST00000479080 C1orf228Q6PIY5 440 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 ARHGAP36Q6ZRI8 547 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 TPGS1Q6ZTW0 290 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 B4GALNT4Q76KP1 1039 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 OTOP3Q7RTS5 596 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 C12orf40Q86WS4 652 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 MFSD6LQ8IWD5 586 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 ADGRG2Q8IZP9 1017 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 SLC35B2Q8TB61 432 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 C1orf54Q8WWF1 131 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 BHMTQ93088 406 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 CELF6Q96J87 481 aaKnown RBP13.48□□□□□ -0.25
CHD3-210ENST00000479080 LRRC19Q9H756 370 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 C10orf88Q9H8K7 445 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 SPHK2Q9NRA0 654 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 PLK2Q9NYY3 685 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 MARK1Q9P0L2 795 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 STIM2Q9P246 746 aa13.48□□□□□ -0.25
CHD3-210ENST00000479080 APOC4-APOC2K7ER74 178 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 TRIM24O15164 1050 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 APOC2P02655 101 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 CDH4P55283 916 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 C2orf54Q08AI8 447 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 MESP2Q0VG99 397 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 TFDP2Q14188 446 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 DHCR24Q15392 516 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 CYP1B1Q16678 543 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 ACBD5Q5T8D3 534 aaPredicted RBP13.47□□□□□ -0.25
CHD3-210ENST00000479080 CHST9Q7L1S5 443 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 UMODL1-AS1Q8N2C9 162 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 C12orf50Q8NA57 414 aaPredicted RBP13.47□□□□□ -0.25
CHD3-210ENST00000479080 HJURPQ8NCD3 748 aaPredicted RBP13.47□□□□□ -0.25
CHD3-210ENST00000479080 ACTL9Q8TC94 416 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 DEPDC1BQ8WUY9 529 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 IRF7Q92985 503 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 OTUB2Q96DC9 234 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 ALG14Q96F25 216 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 CARD6Q9BX69 1037 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 SLC39A8Q9C0K1 460 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 EBF3Q9H4W6 596 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 RBM12Q9NTZ6 932 aaKnown RBP13.47□□□□□ -0.25
CHD3-210ENST00000479080 DUS2Q9NX74 493 aaKnown RBP13.47□□□□□ -0.25
CHD3-210ENST00000479080 TBC1D14Q9P2M4 693 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 DOCK4Q8N1I0 1966 aa13.47□□□□□ -0.25
CHD3-210ENST00000479080 A0A1B0GVM2 712 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 TCAF2A6NFQ2 919 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 LIASO43766 372 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 TJP3O95049 919 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 LUC7L3O95232 432 aaKnown RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 VAV1P15498 845 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 TGM2P21980 687 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 ACVRL1P37023 503 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 IFNAR2P48551 515 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 MAPKAPK2P49137 400 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 NUMBP49757 651 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 NRLP54845 237 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 OASLQ15646 514 aaKnown RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 MPPE1Q53F39 396 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 DNTTIP2Q5QJE6 756 aaKnown RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 RABGAP1LQ5R372 815 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 TMCO3Q6UWJ1 677 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 LRRC31Q6UY01 552 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 ETFBKMTQ8IXQ9 262 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 SPATA4Q8NEY3 305 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 TMA16Q96EY4 203 aaKnown RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 ZNF419Q96HQ0 510 aaPredicted RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 RPGRIP1Q96KN7 1286 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 DDX50Q9BQ39 737 aaKnown RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 CATSPERBQ9H7T0 1116 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 RNF14Q9UBS8 474 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 INTS6Q9UL03 887 aaKnown RBP13.46□□□□□ -0.25
CHD3-210ENST00000479080 DNPEPQ9ULA0 475 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 TBC1D30Q9Y2I9 924 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 OR51B4Q9Y5P0 310 aa13.46□□□□□ -0.25
CHD3-210ENST00000479080 CUL9Q8IWT3 2517 aa13.46□□□□□ -0.26
CHD3-210ENST00000479080 COL6A3P12111 3177 aa13.46□□□□□ -0.26
CHD3-210ENST00000479080 NYNRINQ9P2P1 1898 aaKnown RBP13.45□□□□□ -0.26
CHD3-210ENST00000479080 A0A0D9SEW6 157 aa13.45□□□□□ -0.26
CHD3-210ENST00000479080 LOC730098B7Z3J9 87 aa13.45□□□□□ -0.26
CHD3-210ENST00000479080 KRIT1O00522 736 aa13.45□□□□□ -0.26
CHD3-210ENST00000479080 HOXC11O43248 304 aaPredicted RBP13.45□□□□□ -0.26
CHD3-210ENST00000479080 DAPK3O43293 454 aa13.45□□□□□ -0.26
CHD3-210ENST00000479080 CLDN11O75508 207 aa13.45□□□□□ -0.26
CHD3-210ENST00000479080 PEX11BO96011 259 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms