RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 NOP9Q86U38 636 aaKnown RBP12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 TRABD2AQ86V40 505 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 RIOX2Q8IUF8 465 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 PIAS4Q8N2W9 510 aaPredicted RBP12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 TTC13Q8NBP0 860 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 ATP2A3Q93084 1043 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 OXNAD1Q96HP4 312 aaPredicted RBP12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 SNX18Q96RF0 628 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 FERD3LQ96RJ6 166 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 CDK5RAP1Q96SZ6 601 aaKnown RBP12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 HERC2P3Q9BVR0 1158 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 LIN7BQ9HAP6 207 aa12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 SSU72Q9NP77 194 aaKnown RBP12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.96□□□□□ -0.33
RTFDC1-207ENST00000477573 OTOFQ9HC10 1997 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 H0YJX3 145 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 INO80B-WBP1J3KQ70 363 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 SLC9A3R1O14745 358 aaPredicted RBP12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 MTSS1O43312 755 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 GGPS1O95749 300 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 IL1BP01584 269 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 PSAPP07602 524 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 RAG1P15918 1043 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 SLC9A3P48764 834 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 RAD51Q06609 339 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 KCNH2Q12809 1159 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 SQLEQ14534 574 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 DSC3Q14574 896 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 DUSP7Q16829 419 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 ZCCHC8Q6NZY4 707 aaKnown RBP12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 TTLQ8NG68 377 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 SLC39A13Q96H72 371 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 ZNF347Q96SE7 839 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 SLC29A1Q99808 456 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 MKNK1Q9BUB5 465 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 ZNF717Q9BY31 904 aaPredicted RBP12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 DCLK3Q9C098 648 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 MKRN2Q9H000 416 aaKnown RBP12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 RPF2Q9H7B2 306 aaKnown RBP12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 IFT22Q9H7X7 185 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 TMEM206Q9H813 350 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 SNTG2Q9NY99 539 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 DCTN4Q9UJW0 460 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 MKL2Q9ULH7 1088 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 PSMD13Q9UNM6 376 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 MYRFQ9Y2G1 1151 aa12.96□□□□□ -0.34
RTFDC1-207ENST00000477573 PAPPA2Q9BXP8 1791 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 A0A0G2JND7 137 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 TNPO2O14787 897 aaKnown RBP12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 CCNE2O96020 404 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PSMC3P17980 439 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 DCKP27707 260 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PSMC2P35998 433 aaKnown RBP12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PEX3P56589 373 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 OLR1P78380 273 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 OCA2Q04671 838 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 STX3Q13277 289 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PPIL2Q13356 520 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 POU6F1Q14863 301 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 CLVS2Q5SYC1 327 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 ZNF618Q5T7W0 954 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 ANKRD26P1Q6NSI1 321 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PQLC1Q8N2U9 271 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 CHAC2Q8WUX2 184 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 MARVELD3Q96A59 401 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 VPS33AQ96AX1 596 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 MAP6Q96JE9 813 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PACSIN1Q9BY11 444 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 JPH1Q9HDC5 661 aaPredicted RBP12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 WHRNQ9P202 907 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 PTBP2Q9UKA9 531 aaKnown RBP12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 CNOT11Q9UKZ1 510 aaKnown RBP12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 SOX13Q9UN79 622 aa12.95□□□□□ -0.34
RTFDC1-207ENST00000477573 KIAA1217Q5T5P2 1943 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 LOC285556D6RIA3 1793 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 SPATA31C2B4DYI2 1134 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 H3BNH8 94 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 J3QRK9 145 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 TGFB1I1O43294 461 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 NDUFA2O43678 99 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 PLS3P13797 630 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 TGM1P22735 817 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 EVI2BP34910 448 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 ARL1P40616 181 aaPredicted RBP12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 PTPN9P43378 593 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 CENPAP49450 140 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 TXNL4AP83876 142 aaKnown RBP12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 CCNIQ14094 377 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 ZNF846Q147U1 533 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 XKR9Q5GH70 373 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 RABGAP1LQ5R372 815 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 FAM205BPQ63HN1 556 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 DLK2Q6UY11 383 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 SETD3Q86TU7 594 aaPredicted RBP12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 TDRPQ86YL5 185 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 PPM1KQ8N3J5 372 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 SLC4A11Q8NBS3 891 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 GSTCDQ8NEC7 633 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 SLC2A14Q8TDB8 520 aa12.94□□□□□ -0.34
RTFDC1-207ENST00000477573 HSPH1Q92598 858 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms