RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 CPT1BQ92523 772 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SMG7Q92540 1137 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 STAMQ92783 540 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ABTB1Q969K4 478 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 VPS33AQ96AX1 596 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 MRPL38Q96DV4 380 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 C7orf26Q96N11 449 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ANKRD27Q96NW4 1050 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CTRCQ99895 268 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 DPEP3Q9H4B8 488 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SH2D4AQ9H788 454 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 INTS13Q9NVM9 706 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TOR4AQ9NXH8 423 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PSMC3IPQ9P2W1 217 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 KCND3Q9UK17 655 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PADI4Q9UM07 663 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PCDHA12Q9UN75 941 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 VPS9D1Q9Y2B5 631 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ACOT9Q9Y305 439 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ZNF175Q9Y473 711 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PCDHGB1Q9Y5G3 927 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KDM5BQ9UGL1 1544 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SOGA1O94964 1423 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SMG6Q86US8 1419 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 PCM1Q15154 2024 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 MAGEA13PA6NCF6 341 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CCDC154A6NI56 674 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ZNF98A6NK75 572 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TMEM210A6NLX4 147 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SRRM3A6NNA2 597 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 LINC00587B1AMM8 73 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KIAA0391O15091 583 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 TOM1L1O75674 476 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 PDE5AO76074 875 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SPDEFO95238 335 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RASAL1O95294 804 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 VNN2O95498 520 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CSTBP04080 98 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 GSNP06396 782 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 LIPFP07098 398 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TPOP07202 933 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ITGA2BP08514 1039 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 GSTA2P09210 222 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SPATA31D3P0C874 917 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 YBX3P16989 372 aaKnown RBP eCLIP3.58□□□□□ -1.841e-6■■■□□ 18.4
UBR3-208ENST00000474426 TCEA1P23193 301 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 PDHA2P29803 388 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ICAM3P32942 547 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 EIF1AXP47813 144 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 CYP27A1Q02318 531 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 MAP3K12Q12852 859 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ZNF460Q14592 562 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 RRP1BQ14684 758 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 PDK1Q15118 436 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 IQCCQ4KMZ1 466 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 FAM98BQ52LJ0 330 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 SPOPLQ6IQ16 392 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SLC36A4Q6YBV0 504 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SPATA31D4Q6ZUB0 917 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 YTHDF3Q7Z739 585 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 TTC6Q86TZ1 520 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ZDHHC14Q8IZN3 488 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 VWA5B2Q8N398 1253 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ZSWIM2Q8NEG5 633 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 HEXDCQ8WVB3 486 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TRAPPC12Q8WVT3 735 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 KIAA1143Q96AT1 154 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 LENG1Q96BZ8 264 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 AHCYL2Q96HN2 611 aaKnown RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 FAM84AQ96KN4 292 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CCDC17Q96LX7 622 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ERVMER34-1Q9H9K5 563 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 CYP3A43Q9HB55 503 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 TDP1Q9NUW8 608 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 ZSCAN32Q9NX65 697 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 VSX1Q9NZR4 365 aaPredicted RBP3.58□□□□□ -1.84
UBR3-208ENST00000474426 VPS54Q9P1Q0 977 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 DLGAP4Q9Y2H0 992 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 SLC27A5Q9Y2P5 690 aa3.58□□□□□ -1.84
UBR3-208ENST00000474426 C22orf46C9J442 243 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 LAD1O00515 517 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 POLR1CO15160 346 aaPredicted RBP3.57□□□□□ -1.84
UBR3-208ENST00000474426 HTRA2O43464 458 aaPredicted RBP3.57□□□□□ -1.84
UBR3-208ENST00000474426 PHACTR2O75167 634 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 JRKO75564 520 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 CRCPO75575 148 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 KRT6AP02538 564 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 KRT6BP04259 564 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 RNF224P0DH78 156 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 TMIGD3P0DMS9 266 aaPredicted RBP3.57□□□□□ -1.84
UBR3-208ENST00000474426 ATF2P15336 505 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 GSTT1P30711 240 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 RCVRNP35243 200 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 KIR3DL2P43630 455 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 PHC1P78364 1004 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 CEBPZQ03701 1054 aaKnown RBP3.57□□□□□ -1.84
UBR3-208ENST00000474426 PPATQ06203 517 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 ZNF33AQ06730 810 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 GPM6BQ13491 265 aa3.57□□□□□ -1.84
UBR3-208ENST00000474426 ADRM1Q16186 407 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms