RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HRGP04196 525 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 ATF3P18847 181 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 GLUD2P49448 558 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 CACNB3P54284 484 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 KRTAP10-3P60369 221 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 SEC61A1P61619 476 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 RBM39Q14498 530 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 HNF4GQ14541 408 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 ZRSR1Q15695 479 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 DUSP6Q16828 381 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 RAP1GAP2Q684P5 730 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 CYB5RLQ6IPT4 315 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 CXorf57Q6NSI4 855 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 C8orf82Q6P1X6 216 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 TLDC1Q6P9B6 456 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 SDR16C5Q8N3Y7 309 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 NODALQ96S42 347 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 ABHD14AQ9BUJ0 271 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 IL25Q9H293 177 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 GEMIN8Q9NWZ8 242 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 A0A1B0GVY2 172 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 TPP1O14773 563 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 SLC16A5O15375 505 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 SP1P08047 785 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 TGM2P21980 687 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 SHC2P98077 582 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 DCAF12L2Q5VW00 463 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 WBP2NLQ6ICG8 309 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 MSANTD2Q6P1R3 559 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 RNF44Q7L0R7 432 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 ZNF771Q7L3S4 317 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 CHST15Q7LFX5 561 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 CCDC28AQ8IWP9 274 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 IP6K1Q92551 441 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 STRBPQ96SI9 672 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 POLDIP3Q9BY77 421 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 KCNK9Q9NPC2 374 aa3.71□□□□□ -1.82
CCDC88A-212ENST00000474059 GOLGA6CA6NDK9 693 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 GOLGA6BA6NDN3 693 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 PRR23AA6NEV1 266 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 CLCA1A8K7I4 914 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 ZBED1O96006 694 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 IGLV2-11P01706 119 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 GOLGA6DP0CG33 693 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 PEX2P28328 305 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 TBX4P57082 545 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 ATP1A4Q13733 1029 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 GFOD2Q3B7J2 385 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 MINDY4Q4G0A6 757 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 PPP4R4Q6NUP7 873 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 ZNF449Q6P9G9 518 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 CREB3L2Q70SY1 520 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 MDGA2Q7Z553 956 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 HES6Q96HZ4 224 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 INPP4AQ96PE3 977 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 FSCN3Q9NQT6 498 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 GOLGA6AQ9NYA3 693 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 RAI2Q9Y5P3 530 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 WDR81Q562E7 1941 aa3.7□□□□□ -1.82
CCDC88A-212ENST00000474059 PLSCR5A0PG75 271 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 GOLIM4O00461 696 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 KIF3BO15066 747 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 PRC1O43663 620 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 NFATC1O95644 943 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 PAK4O96013 591 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 CHRNB2P17787 502 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 IGFBP2P18065 325 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 ZP1P60852 638 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 BNC1Q01954 994 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 PMPCAQ10713 525 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 SEMA5AQ13591 1074 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 DNTTIP2Q5QJE6 756 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 FAXCQ5TGI0 409 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 MRNIPQ6NTE8 343 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 CYB5R4Q7L1T6 521 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 ZNF367Q7RTV3 350 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 RFLNBQ8N5W9 214 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 CCDC136Q96JN2 1154 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 FAM204AQ9H8W3 233 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 PRDM16Q9HAZ2 1276 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 ZNF304Q9HCX3 659 aa3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 PNRC2Q9NPJ4 139 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-212ENST00000474059 TRBV5-7A0A0A0MS05 114 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 VSTM5A8MXK1 200 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 ZSCAN9O15535 394 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 CCNT2O60583 730 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 KRT36O76013 467 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 PECAM1P16284 738 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 TNFSF8P32971 234 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 GNALP38405 381 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 GSTM5P46439 218 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 PKP1Q13835 747 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 KIAA0753Q2KHM9 967 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 TDRD12Q587J7 1177 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 OTUD1Q5VV17 481 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 DARS2Q6PI48 645 aaKnown RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 CCDC149Q6ZUS6 474 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 H1FNTQ75WM6 255 aaPredicted RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms