RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 C9orf64Q5T6V5 341 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 CIR1Q86X95 450 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 DHX40Q8IX18 779 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 APCDD1Q8J025 514 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 GATA6Q92908 595 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 BIRC7Q96CA5 298 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 ORAI3Q9BRQ5 295 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 PABPC3Q9H361 631 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 DDIT4Q9NX09 232 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 FNDC3AQ9Y2H6 1198 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 A0A1B0GVT2 93 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 F5H5T6 163 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 IGHV4-34P06331 123 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 SRPRAP08240 638 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 CSNK1EP49674 416 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 AFF3P51826 1226 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 CDK17Q00537 523 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 ECT2LQ008S8 904 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 PTK2Q05397 1052 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 PTPN20Q4JDL3 420 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 EFHC1Q5JVL4 640 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 OTUD1Q5VV17 481 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 USP30Q70CQ3 517 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 CCDC117Q8IWD4 279 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 FAM71AQ8IYT1 594 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 CCAR2Q8N163 923 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 ATP6V0D2Q8N8Y2 350 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 NDST4Q9H3R1 872 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 GAREM1Q9H706 876 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 SGK2Q9HBY8 427 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 PLCB1Q9NQ66 1216 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 KIAA1522Q9P206 1035 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 SLCO3A1Q9UIG8 710 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 KLK13Q9UKR3 277 aa19.41■□□□□ 0.7
CCDC88B-206ENST00000473405 SYNJ2BP-COX16A0A087WUM0 186 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 CBFA2T3O75081 653 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 CER1O95813 267 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 ZNF883P0CG24 379 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 SLC2A3P11169 496 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 CCR1P32246 355 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 MATKP42679 507 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 NUMBP49757 651 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 STK19P49842 368 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 IRAK1P51617 712 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 CENPCQ03188 943 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 HNRNPDQ14103 355 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 CST6Q15828 149 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 TPD52L1Q16890 204 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 HLA-BQ31612 363 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 VWA3BQ502W6 1294 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 HSP90AA4PQ58FG1 418 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 TTC39BQ5VTQ0 682 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 CXorf57Q6NSI4 855 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 C11orf57Q6ZUT1 292 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 TUBGCP2Q9BSJ2 902 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 TM9SF3Q9HD45 589 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 OSGEPQ9NPF4 335 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 COX16Q9P0S2 106 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 SCML1Q9UN30 329 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 NEUROG3Q9Y4Z2 214 aa19.4■□□□□ 0.7
CCDC88B-206ENST00000473405 PTPRBP23467 1997 aa19.39■□□□□ 0.7
CCDC88B-206ENST00000473405 EDDM13A0A1B0GTR0 161 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 A0A1B0GVM2 712 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 TARSL2A2RTX5 802 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 TCAF2A6NFQ2 919 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 C10orf142B7Z368 130 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 MID1O15344 667 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 DAB1O75553 588 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 FSBPO95073 299 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 MOCS3O95396 460 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 PDGFRAP16234 1089 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 ABCB4P21439 1286 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 MZF1P28698 734 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 ERCC5P28715 1186 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 KRT9P35527 623 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 TRIP6Q15654 476 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 OR6B2Q6IFH4 312 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 FBXL22Q6P050 247 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 IL27RAQ6UWB1 636 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 LAYNQ6UX15 382 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 SLC26A9Q7LBE3 791 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 MMAAQ8IVH4 418 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 FAM114A1Q8IWE2 563 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 IGSF8Q969P0 613 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 RPL10LQ96L21 214 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 NOX5Q96PH1 765 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 FAM129BQ96TA1 746 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 FBXL12Q9NXK8 326 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 PCOLCE2Q9UKZ9 415 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 CEP83Q9Y592 693 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 DOCK4Q8N1I0 1966 aa19.39■□□□□ 0.69
CCDC88B-206ENST00000473405 PRKCSHP14314 528 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 VAV1P15498 845 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 CD27P26842 260 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 GGCXP38435 758 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 GRIA4P48058 902 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 PLK1P53350 603 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 SLC6A3Q01959 620 aa19.38■□□□□ 0.69
CCDC88B-206ENST00000473405 SLC12A1Q13621 1099 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms