RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SNAP91O60641 907 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TRAPPC2P0DI81 140 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TRAPPC2BP0DI82 140 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SLC7A1P30825 629 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 HADHAP40939 763 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ETV6P41212 452 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 HALP42357 657 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF143P52747 638 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GAD2Q05329 585 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TRIM25Q14258 630 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MUM1Q2TAK8 710 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 LIX1LQ8IVB5 337 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 OLFM1Q99784 485 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 LXNQ9BS40 222 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FIS1Q9Y3D6 152 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 AP4B1Q9Y6B7 739 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GRID2O43424 1007 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 OPHN1O60890 802 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 RNASEH2AO75792 299 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DGKIO75912 1065 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SLC4A1P02730 911 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TGM1P22735 817 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MAPK4P31152 587 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 RPL7AP62424 266 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 LPIN1Q14693 890 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 RAPH1Q70E73 1250 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ERMP1Q7Z2K6 904 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FBXO11Q86XK2 927 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GALNT13Q8IUC8 556 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MAPK15Q8TD08 544 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DCUN1D1Q96GG9 259 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DYDC2Q96IM9 177 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GPR101Q96P66 508 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DUSP21Q9H596 190 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SAYSD1Q9NPB0 183 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 UBE2TQ9NPD8 197 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 CCM2LQ9NUG4 571 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DOCK5Q9H7D0 1870 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FUOMA2VDF0 154 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 EXTL3O43909 919 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GLRA3O75311 464 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TCF4P15884 667 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SSTR1P30872 391 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ADCY8P40145 1251 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GCLMP48507 274 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GJA9P57773 515 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MS4A2Q01362 244 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TFDP1Q14186 410 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 KLHDC10Q6PID8 442 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 UNC5AQ6ZN44 842 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FRMD7Q6ZUT3 714 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 RFX6Q8HWS3 928 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DCLK2Q8N568 766 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TTLL6Q8N841 843 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 C7orf31Q8N865 590 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TMEM35BQ8NCS4 154 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ISG20Q96AZ6 181 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 CMTM5Q96DZ9 223 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 NXF2Q9GZY0 626 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 UNC93B1Q9H1C4 597 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FZD8Q9H461 694 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 THEGQ9P2T0 379 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PI4KBQ9UBF8 816 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 RIMKLBQ9ULI2 386 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ERGIC3Q9Y282 383 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PCDHB4Q9Y5E5 795 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 GAS7O60861 476 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 HMGCRP04035 888 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 CDC25CP30307 473 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ZFP36L2P47974 494 aaKnown RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 LIG4P49917 911 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PDK2Q15119 407 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SLC36A3Q495N2 470 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MLIPQ5VWP3 458 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 KDM4DQ6B0I6 523 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 EPHX4Q8IUS5 362 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ATP6V0D2Q8N8Y2 350 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PGAP3Q96FM1 320 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FAM84AQ96KN4 292 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 EBF4Q9BQW3 602 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 TRMOQ9BU70 441 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PCIF1Q9H4Z3 704 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SIAEQ9HAT2 523 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 LZTS1Q9Y250 596 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 DDTLA6NHG4 134 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 A6NJR5 290 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PALM2-AKAP2B1ALY0 433 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 H0YAE9 185 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 JRKO75564 520 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 UPP2O95045 317 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PCSK2P16519 638 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 HOXC13P31276 330 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ZNF135P52742 658 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 MLLT10P55197 1068 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 KCTD2Q14681 263 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 FAM187BQ17R55 369 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 OTUD6AQ7L8S5 288 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 SLC26A9Q7LBE3 791 aa5.48□□□□□ -1.53
SYNE1-220ENST00000471834 ARID3BQ8IVW6 561 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-220ENST00000471834 PGBD3Q8N328 593 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms