RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PABPC3Q9H361 631 aaKnown RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 CLSTN2Q9H4D0 955 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 GAREM1Q9H706 876 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 FAM204AQ9H8W3 233 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 OSGEPQ9NPF4 335 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 CHMP5Q9NZZ3 219 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 AJAP1Q9UKB5 411 aaPredicted RBP17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 NCKAP1Q9Y2A7 1128 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 PCDHB9Q9Y5E1 797 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 ITIH6Q6UXX5 1313 aa17.13■□□□□ 0.33
CCDC28B-204ENST00000469003 NYNRINQ9P2P1 1898 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 A0A1B0GVT2 93 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 TARSL2A2RTX5 802 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 RNASEH1O60930 286 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 HSF2BPO75031 334 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 ABCB4P21439 1286 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 CCR1P32246 355 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 CTSOP43234 321 aaPredicted RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 AFF3P51826 1226 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 ECT2LQ008S8 904 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 SFSWAPQ12872 951 aaKnown RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC12A1Q13621 1099 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 HLA-BQ31612 363 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 C9orf64Q5T6V5 341 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 TTC39BQ5VTQ0 682 aaPredicted RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 C11orf57Q6ZUT1 292 aaPredicted RBP17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 FAM114A1Q8IWE2 563 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 BIRC7Q96CA5 298 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 IL21RQ9HBE5 538 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 DDIT4Q9NX09 232 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 DNAJC12Q9UKB3 198 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 SLCO1B1Q9Y6L6 691 aa17.12■□□□□ 0.33
CCDC28B-204ENST00000469003 DSPP15924 2871 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 EDDM13A0A1B0GTR0 161 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 TMEM8BA6NDV4 472 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 TTC34A8MYJ7 566 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 FSBPO95073 299 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 CD27P26842 260 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 CLCN1P35523 988 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 GRIA4P48058 902 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 CSNK1EP49674 416 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 SNX16P57768 344 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 MTA1Q13330 715 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 TEAD4Q15561 434 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 RNF219Q5W0B1 726 aaPredicted RBP17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 OR6B2Q6IFH4 312 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 OLFML1Q6UWY5 402 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 FAM183BPQ6ZVS7 135 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 APCDD1Q8J025 514 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 CCAR2Q8N163 923 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 C1orf131Q8NDD1 294 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 GANCQ8TET4 914 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 RNF34Q969K3 372 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 TM9SF3Q9HD45 589 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 TM7SF3Q9NS93 570 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 FBXL12Q9NXK8 326 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 FNDC3AQ9Y2H6 1198 aaKnown RBP17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 MSRB2Q9Y3D2 182 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 CEP83Q9Y592 693 aa17.11■□□□□ 0.33
CCDC28B-204ENST00000469003 SYNJ2BP-COX16A0A087WUM0 186 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 A0A1B0GVM2 712 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 TCAF2A6NFQ2 919 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 FOXN3O00409 490 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 CBFA2T3O75081 653 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 DAB1O75553 588 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 GRAP2O75791 330 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 ERBB2P04626 1255 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 KRT9P35527 623 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 PLK1P53350 603 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 OXCT1P55809 520 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 CST6Q15828 149 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 RABGAP1LQ5R372 815 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 KIAA0895LQ68EN5 471 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 RAB44Q7Z6P3 723 aaPredicted RBP17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 GLRX5Q86SX6 157 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC47A2Q86VL8 602 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 MMAAQ8IVH4 418 aaKnown RBP17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 ORAI3Q9BRQ5 295 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 NDST4Q9H3R1 872 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 COX16Q9P0S2 106 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 SERGEFQ9UGK8 458 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 SLCO3A1Q9UIG8 710 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 KLK13Q9UKR3 277 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 PCOLCE2Q9UKZ9 415 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 PCDHGB2Q9Y5G2 931 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 AKAP13Q12802 2813 aa17.1■□□□□ 0.33
CCDC28B-204ENST00000469003 A0A1W2PP55 124 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FAM221BA6H8Z2 402 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 MID1O15344 667 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 IGHV4-34P06331 123 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 FTH1P19P0C7X4 201 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 PNMA6AP0CW24 399 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 PRKCSHP14314 528 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 PDGFRAP16234 1089 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 ERCC5P28715 1186 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC8A1P32418 973 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 BPIFB4P59827 614 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 SLC6A3Q01959 620 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 SULT2A1Q06520 285 aa17.09■□□□□ 0.33
CCDC28B-204ENST00000469003 KIF19Q2TAC6 998 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms