RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NME3Q13232 169 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SLC25A52Q3SY17 297 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 KIAA1211LQ6NV74 962 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SND1Q7KZF4 910 aaKnown RBP eCLIP18.34■□□□□ 0.53
COL7A1-205ENST00000465238 RABEPKQ7Z6M1 372 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 EMC1Q8N766 993 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 CEP76Q8TAP6 659 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 TRIM11Q96F44 468 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 FCRL2Q96LA5 508 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-205ENST00000465238 NPY6RQ99463 290 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 ISCUQ9H1K1 167 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 TMEM51Q9NW97 253 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.34■□□□□ 0.53
COL7A1-205ENST00000465238 CACNA2D2Q9NY47 1150 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 SLC12A6Q9UHW9 1150 aa18.34■□□□□ 0.53
COL7A1-205ENST00000465238 A0A087X0T9 212 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 SSU72P8A0A1W2PR75 194 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 SIGLEC16A6NMB1 481 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 GIPC1O14908 333 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 NPC1O15118 1278 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 LATS1O95835 1130 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 FAM228BP0C875 321 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 PDGFRAP16234 1089 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 ENGP17813 658 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 CDC25BP30305 580 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 ZNF33AQ06730 810 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 E2F5Q15329 346 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 DUOXA1Q1HG43 343 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 UAP1L1Q3KQV9 507 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 ZC3H12AQ5D1E8 599 aaKnown RBP18.33■□□□□ 0.52
COL7A1-205ENST00000465238 CCDC122Q5T0U0 273 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 FYB2Q5VWT5 728 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 ALKBH5Q6P6C2 394 aaKnown RBP18.33■□□□□ 0.52
COL7A1-205ENST00000465238 DCUN1D2Q6PH85 259 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 TC2NQ8N9U0 490 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 RXFP2Q8WXD0 754 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 AZIN2Q96A70 460 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 SLC39A13Q96H72 371 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 CCDC42Q96M95 316 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 PARVAQ9NVD7 372 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 SLC6A14Q9UN76 642 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 FRYQ5TBA9 3013 aa18.33■□□□□ 0.52
COL7A1-205ENST00000465238 ATXN2Q99700 1313 aaKnown RBP18.32■□□□□ 0.52
COL7A1-205ENST00000465238 AKR1B10O60218 316 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 ACSL4O60488 711 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 KRT37O76014 449 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 GJB6O95452 261 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 MOCS2O96007 188 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CYBBP04839 570 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CFIP05156 583 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 MYBL1P10243 752 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 ABCB4P21439 1286 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 SDC4P31431 198 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CCR1P32246 355 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 DEUP1Q05D60 604 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 ZNF252P-AS1Q0IIN9 211 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 MAPK8IP2Q13387 824 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-205ENST00000465238 STARD3Q14849 445 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 ADGRF1Q5T601 910 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 DNAAF5Q86Y56 855 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CPXM2Q8N436 756 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 ATP6V0D2Q8N8Y2 350 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 JOSD2Q8TAC2 188 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 UCMAQ8WVF2 138 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 NT5C3BQ969T7 300 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 ZNF653Q96CK0 615 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 P2RY11Q96G91 374 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 MRGPRX1Q96LB2 322 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CFAP57Q96MR6 1250 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 TBCBQ99426 244 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CHP1Q99653 195 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 DDX50Q9BQ39 737 aaKnown RBP18.32■□□□□ 0.52
COL7A1-205ENST00000465238 NHEJ1Q9H9Q4 299 aaPredicted RBP18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CNOT8Q9UFF9 292 aaKnown RBP18.32■□□□□ 0.52
COL7A1-205ENST00000465238 CYP8B1Q9UNU6 501 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 PAXBP1Q9Y5B6 917 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 RAD54BQ9Y620 910 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 STON1Q9Y6Q2 735 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 PCNX2A6NKB5 2137 aa18.32■□□□□ 0.52
COL7A1-205ENST00000465238 TCRBV5S1A1TA0A578 114 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 C2CD4BA6NLJ0 364 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 SERPINF2P08697 491 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 GPD1P21695 349 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 RFC1P35251 1148 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-205ENST00000465238 MAPK8P45983 427 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 GFPT1Q06210 699 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-205ENST00000465238 MTA1Q13330 715 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 EIF4EBP2Q13542 120 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-205ENST00000465238 SLC18A3Q16572 532 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 PLEKHA7Q6IQ23 1121 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 TRNP1Q6NT89 227 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 DEFB119Q8N690 84 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 PGAP3Q96FM1 320 aaPredicted RBP18.31■□□□□ 0.52
COL7A1-205ENST00000465238 BTN2A3PQ96KV6 586 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 SLC2A11Q9BYW1 496 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 MYO1AQ9UBC5 1043 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 STOML2Q9UJZ1 356 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 CACNA1EQ15878 2313 aa18.31■□□□□ 0.52
COL7A1-205ENST00000465238 ADAMTS9Q9P2N4 1935 aa18.3■□□□□ 0.52
COL7A1-205ENST00000465238 GOLGA6L3A6NEY3 463 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms