RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 LAMC2Q13753 1193 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 TTLL12Q14166 644 aaPredicted RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 MAP7Q14244 749 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 ACAD11Q709F0 780 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 PLD6Q8N2A8 252 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 OR52B2Q96RD2 323 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 COG4Q9H9E3 785 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 RPF1Q9H9Y2 349 aaKnown RBP12.75□□□□□ -0.37
HDAC4-208ENST00000463007 XPNPEP3Q9NQH7 507 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 UBP1Q9NZI7 540 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 TSPAN16Q9UKR8 245 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 SCN1AP35498 2009 aa12.75□□□□□ -0.37
HDAC4-208ENST00000463007 A0A087WZ62 844 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 KCNK1O00180 336 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CHADO15335 359 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 ATP9BO43861 1147 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 TSPAN1O60635 241 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 FKBP6O75344 327 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 MT-CO1P00395 513 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 PFKMP08237 780 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 FGF3P11487 239 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-208ENST00000463007 LCP1P13796 627 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CYP2F1P24903 491 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 NDST1P52848 882 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CBLBQ13191 982 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 HEATR6Q6AI08 1181 aaKnown RBP12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SNX32Q86XE0 403 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 TP53INP2Q8IXH6 220 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 RAB3IL1Q8TBN0 382 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 MAPK15Q8TD08 544 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 MS4A4AQ96JQ5 239 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SIGLEC10Q96LC7 697 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 LRGUKQ96M69 825 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 FDXACB1Q9BRP7 624 aaPredicted RBP12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CYP3A43Q9HB55 503 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 VTA1Q9NP79 307 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 LZTS1Q9Y250 596 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SH3BP1Q9Y3L3 701 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 NDC80O14777 642 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 MAGEB3O15480 346 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CHRNGP07510 517 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CYP2C8P10632 490 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SDC4P31431 198 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 CHN2P52757 468 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 IRF9Q00978 393 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 FAM131BQ86XD5 332 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 FAM149B1Q96BN6 582 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SGF29Q96ES7 293 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 EBNA1BP2Q99848 306 aaKnown RBP12.74□□□□□ -0.37
HDAC4-208ENST00000463007 NUF2Q9BZD4 464 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 LMCD1Q9NZU5 365 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 EMCNQ9ULC0 261 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SLC45A1Q9Y2W3 748 aa12.74□□□□□ -0.37
HDAC4-208ENST00000463007 SNAI1O95863 264 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 PDGFRBP09619 1106 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 ARSAP15289 507 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 IL4RP24394 825 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 RPL10P27635 214 aaKnown RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 NUMBP49757 651 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 MBLAC2Q68D91 279 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 TMEM176AQ96HP8 235 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 CATSPER2Q96P56 530 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 OLFM3Q96PB7 478 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 UBAP1Q9NZ09 502 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 FETUBQ9UGM5 382 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 SSX2IPQ9Y2D8 614 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 RPS6KL1Q9Y6S9 549 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 BPTFQ12830 3046 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 TPH1P17752 444 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 CRHR1P34998 444 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 GALK1P51570 392 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF143P52747 638 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 WASHC5Q12768 1159 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 FLOT2Q14254 428 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 PCLAFQ15004 111 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 NADK2Q4G0N4 442 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 PKDCCQ504Y2 493 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 TMCO4Q5TGY1 634 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 PMF1Q6P1K2 205 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 LAYNQ6UX15 382 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 TMC7Q7Z402 723 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 AMIGO2Q86SJ2 522 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 DCUN1D1Q96GG9 259 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 AGAP2Q99490 1192 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 CNPY3Q9BT09 278 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 MRPL1Q9BYD6 325 aaKnown RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 PCDH18Q9HCL0 1135 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 NME7Q9Y5B8 376 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 PAPSS1O43252 624 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 FOXD2O60548 495 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 C1QAP02745 245 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 SRGAP2BP0DMP2 458 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 COX4I1P13073 169 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 ADORA2BP29275 332 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 TNFAIP2Q03169 654 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 CCDC14Q49A88 953 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 DNAAF3Q8N9W5 541 aa12.73□□□□□ -0.37
HDAC4-208ENST00000463007 GTF3C2Q8WUA4 911 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 FRMD8P1Q9BZ68 369 aaPredicted RBP12.73□□□□□ -0.37
HDAC4-208ENST00000463007 CXCL16Q9H2A7 254 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms