RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 GIT2Q14161 759 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 ERV3-1Q14264 604 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 PPP6R3Q5H9R7 873 aaPredicted RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 MDH1BQ5I0G3 518 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 HABP4Q5JVS0 413 aaKnown RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 PHF19Q5T6S3 580 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 WDR93Q6P2C0 686 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 TMEM53Q6P2H8 277 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 KIF6Q6ZMV9 814 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 TADA2BQ86TJ2 420 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 LRRTM4Q86VH4 590 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 VPS36Q86VN1 386 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 PROSER1Q86XN7 944 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 MFN1Q8IWA4 741 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 THNSL1Q8IYQ7 743 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 KIAA0319LQ8IZA0 1049 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 SYT2Q8N9I0 419 aaPredicted RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 DTX3Q8N9I9 347 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 ZNF527Q8NB42 609 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 KCTD6Q8NC69 237 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 NUDT10Q8NFP7 164 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 ADAMTS15Q8TE58 950 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 GRK7Q8WTQ7 553 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 RFFLQ8WZ73 363 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 PPP2R3CQ969Q6 453 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 NSUN4Q96CB9 384 aaKnown RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 NUDT11Q96G61 164 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 C7orf34Q96L11 122 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 IFT74Q96LB3 600 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 MXD3Q9BW11 206 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 JAM3Q9BX67 310 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 EIF2AQ9BY44 585 aaKnown RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 SENP6Q9GZR1 1112 aaPredicted RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 LSG1Q9H089 658 aaKnown RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 MEGF9Q9H1U4 602 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 EPN3Q9H201 632 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 CENPHQ9H3R5 247 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 GORASP2Q9H8Y8 452 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 COPS7BQ9H9Q2 264 aaPredicted RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 UCK1Q9HA47 277 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 SLC6A20Q9NP91 592 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 POLE3Q9NRF9 147 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 GPR27Q9NS67 375 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 ZBTB40Q9NUA8 1239 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 KIF17Q9P2E2 1029 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 ADAM29Q9UKF5 820 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 CPSF3Q9UKF6 684 aaKnown RBP5.63□□□□□ -1.51
VPS41-209ENST00000457055 ANGPTL2Q9UKU9 493 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 PCDHGB4Q9UN71 923 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 USP19O94966 1318 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 DISP2A7MBM2 1401 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 CCDC141Q6ZP82 1450 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 ADGRB3O60242 1522 aa5.63□□□□□ -1.51
VPS41-209ENST00000457055 hCG_1807616A0A1W2PRN6 198 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 FRMD3A2A2Y4 597 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 CCDC78A2IDD5 438 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 GOLGA6L9A6NEM1 432 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 SLC9B1P1A6NJY1 282 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 PATE3B3GLJ2 98 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 NT5C1B-RDH14C9J2C7 533 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 HSBP1L1C9JCN9 74 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 F8W810 466 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 CYR61O00622 381 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 HAT1O14929 419 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 MSCO60682 206 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 ERLIN2O94905 339 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 KLHL2O95198 593 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 ABCB1P08183 1280 aaPredicted RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 CYP3A4P08684 503 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 TNFSF4P23510 183 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 RGS2P41220 211 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 PRIM2P49643 509 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 CLCN4P51793 760 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 MYL6P60660 151 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 GMFBP60983 142 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 VBP1P61758 197 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 SEMA5AQ13591 1074 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 HNRNPDQ14103 355 aaKnown RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 HABP2Q14520 560 aaPredicted RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 ACAP2Q15057 778 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 NCF4Q15080 339 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 PTPAQ15257 358 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 ADIPOQQ15848 244 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 PFKFB3Q16875 520 aaPredicted RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 USH1GQ495M9 461 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 IZUMO3Q5VZ72 239 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 CENPPQ6IPU0 288 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 KRTAP5-3Q6L8H2 238 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 DARS2Q6PI48 645 aaKnown RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 APOA5Q6Q788 366 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 USP53Q70EK8 1073 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 PIWIL3Q7Z3Z3 882 aaKnown RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 PRPF39Q86UA1 669 aaKnown RBP5.62□□□□□ -1.51
VPS41-209ENST00000457055 MICU3Q86XE3 530 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 ERO1BQ86YB8 467 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 SLC22A9Q8IVM8 553 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 WDR63Q8IWG1 891 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 ZFPM1Q8IX07 1006 aa5.62□□□□□ -1.51
VPS41-209ENST00000457055 TCP11L2Q8N4U5 519 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms