RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 NT5C3BQ969T7 300 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 PGAP3Q96FM1 320 aaPredicted RBP21.91■■□□□ 1.1
HMGB3-205ENST00000455596 RPRD1AQ96P16 312 aaPredicted RBP21.91■■□□□ 1.1
HMGB3-205ENST00000455596 NUP58Q9BVL2 599 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 GPR174Q9BXC1 333 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 HSD3B7Q9H2F3 369 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 WDCPQ9H6R7 721 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 PIGVQ9NUD9 493 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 TMEM51Q9NW97 253 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 ERVW-1Q9UQF0 538 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 HS3ST4Q9Y661 456 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 CACNA1AO00555 2505 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 GOLGA8SH3BPF8 625 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 PAGE1O75459 146 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 C7P10643 843 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 TFE3P19532 575 aaPredicted RBP21.9■■□□□ 1.1
HMGB3-205ENST00000455596 OXCT1P55809 520 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 FMO1Q01740 532 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 DEUP1Q05D60 604 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 AUHQ13825 339 aaKnown RBP21.9■■□□□ 1.1
HMGB3-205ENST00000455596 C2CD6Q53TS8 623 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 WDR45BQ5MNZ6 344 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 DAB2IPQ5VWQ8 1189 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 CIR1Q86X95 450 aaPredicted RBP21.9■■□□□ 1.1
HMGB3-205ENST00000455596 APCDD1Q8J025 514 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 CADM4Q8NFZ8 388 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 MRGPRX3Q96LB0 322 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 ERGIC2Q96RQ1 377 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 ARHGEF38Q9NXL2 777 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 VANGL2Q9ULK5 521 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 SLC6A14Q9UN76 642 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 PAXBP1Q9Y5B6 917 aa21.9■■□□□ 1.1
HMGB3-205ENST00000455596 MEI4A8MW99 385 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 CDX4O14627 284 aaPredicted RBP21.89■■□□□ 1.09
HMGB3-205ENST00000455596 DNTTP04053 509 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 CYP1A1P04798 512 aaPredicted RBP21.89■■□□□ 1.09
HMGB3-205ENST00000455596 SERPINF2P08697 491 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 ENGP17813 658 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 CXCR3P49682 368 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 ECT2LQ008S8 904 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 CENPCQ03188 943 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 ZBTB16Q05516 673 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 SLC25A52Q3SY17 297 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 ANO6Q4KMQ2 910 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 RNF219Q5W0B1 726 aaPredicted RBP21.89■■□□□ 1.09
HMGB3-205ENST00000455596 TRIM72Q6ZMU5 477 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 IGSF8Q969P0 613 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 PPP1R9BQ96SB3 815 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 TBCBQ99426 244 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 ADAM33Q9BZ11 813 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 TKTL2Q9H0I9 626 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 SIK2Q9H0K1 926 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 TMEM59LQ9UK28 342 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 DNAH14Q0VDD8 3507 aa21.89■■□□□ 1.09
HMGB3-205ENST00000455596 NUMA1Q14980 2115 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 ADCY5O95622 1261 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 PDGFRAP16234 1089 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 CHRNB2P17787 502 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 KCNA4P22459 653 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 FLT3P36888 993 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 GGCXP38435 758 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 CTSOP43234 321 aaPredicted RBP21.88■■□□□ 1.09
HMGB3-205ENST00000455596 RPS14P62263 151 aaKnown RBP21.88■■□□□ 1.09
HMGB3-205ENST00000455596 HNRNPA1L2Q32P51 320 aaKnown RBP21.88■■□□□ 1.09
HMGB3-205ENST00000455596 ZNF776Q68DI1 518 aaPredicted RBP21.88■■□□□ 1.09
HMGB3-205ENST00000455596 CAVIN1Q6NZI2 390 aaKnown RBP21.88■■□□□ 1.09
HMGB3-205ENST00000455596 ARCQ7LC44 396 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 APTXQ7Z2E3 356 aaKnown RBP21.88■■□□□ 1.09
HMGB3-205ENST00000455596 FAM124AQ86V42 546 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 BPIFA3Q9BQP9 254 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 MTG2Q9H4K7 406 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 SUSD2Q9UGT4 822 aa21.88■■□□□ 1.09
HMGB3-205ENST00000455596 ITIH6Q6UXX5 1313 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 SIN3BO75182 1162 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 ATP1A3P13637 1013 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 GNSP15586 552 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 MZF1P28698 734 aaPredicted RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 NNMTP40261 264 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 PLK1P53350 603 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 GFPT1Q06210 699 aaPredicted RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 SULT2A1Q06520 285 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 ZNF177Q13360 481 aaPredicted RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 ARID5BQ14865 1188 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 TTC31Q49AM3 519 aaPredicted RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 C5orf22Q49AR2 442 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 DCAF12L1Q5VU92 463 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 CXorf57Q6NSI4 855 aaKnown RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 DHX40Q8IX18 779 aaKnown RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 RSPH9Q9H1X1 276 aaPredicted RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 CAPN10Q9HC96 672 aa21.87■■□□□ 1.09
HMGB3-205ENST00000455596 METTL5Q9NRN9 209 aaKnown RBP21.87■■□□□ 1.09
HMGB3-205ENST00000455596 TARSL2A2RTX5 802 aaKnown RBP21.86■■□□□ 1.09
HMGB3-205ENST00000455596 SMTNL1A8MU46 457 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 METTL12A8MUP2 240 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 RNASEH1O60930 286 aaKnown RBP21.86■■□□□ 1.09
HMGB3-205ENST00000455596 CLDN11O75508 207 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 MMP8P22894 467 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 MAOBP27338 520 aa21.86■■□□□ 1.09
HMGB3-205ENST00000455596 MAPK8P45983 427 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms