RNA–Protein interactions for RNA: ENST00000451716.5

COL27A1-202, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 2,865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-202ENST00000451716 DPYSQ14117 519 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 PRKD1Q15139 912 aaPredicted RBP12.4□□□□□ -0.43
COL27A1-202ENST00000451716 TAF1BQ53T94 588 aaPredicted RBP12.4□□□□□ -0.43
COL27A1-202ENST00000451716 FYB2Q5VWT5 728 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 ASRGL1Q7L266 308 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 BNIPLQ7Z465 357 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 NPWQ8N729 165 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 MAGEC3Q8TD91 643 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 LRRC39Q96DD0 335 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 TMEM209Q96SK2 561 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 NOD2Q9HC29 1040 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 XAB2Q9HCS7 855 aaKnown RBP12.4□□□□□ -0.43
COL27A1-202ENST00000451716 SLC38A7Q9NVC3 462 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 PCDHA11Q9Y5I1 949 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 N6AMT1Q9Y5N5 214 aa12.4□□□□□ -0.43
COL27A1-202ENST00000451716 FAM159BA6NKW6 160 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 IGHA2P01877 340 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 LINGO3P0C6S8 592 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 YY1P25490 414 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 ALDH3A1P30838 453 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 IRF5Q13568 498 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 CES4AQ5XG92 561 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 NDUFAF2Q8N183 169 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 SOCS4Q8WXH5 440 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 RTP3Q9BQQ7 232 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 ARHGEF3Q9NR81 526 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 PADI3Q9ULW8 664 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 PSAT1Q9Y617 370 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 TTC3P53804 2025 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 E2F8A0AVK6 867 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 HACD1B0YJ81 288 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 DCLK1O15075 740 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 LTFP02788 710 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 T-ENOLP0DO92 83 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 LHX1P48742 406 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 PDK1Q15118 436 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 UPP1Q16831 310 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 C4orf22Q6V702 233 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 GALNT15Q8N3T1 639 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 ARNTL2Q8WYA1 636 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 MYLPFQ96A32 169 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 PRR11Q96HE9 360 aaPredicted RBP12.39□□□□□ -0.43
COL27A1-202ENST00000451716 CORO1BQ9BR76 489 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 ZFYVE28Q9HCC9 887 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 TMLHEQ9NVH6 421 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 SYBUQ9NX95 663 aa12.39□□□□□ -0.43
COL27A1-202ENST00000451716 RCOR3Q9P2K3 495 aaPredicted RBP12.39□□□□□ -0.43
COL27A1-202ENST00000451716 ITGB1P05556 798 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 TROVE2P10155 538 aaKnown RBP eCLIP12.38□□□□□ -0.431e-7■■■□□ 15.7
COL27A1-202ENST00000451716 CCNB1P14635 433 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 TPI1P60174 286 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 RGMBQ6NW40 437 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 RSPH3Q86UC2 560 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 SCAMP5Q8TAC9 235 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 APOL2Q9BQE5 337 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 FBXO6Q9NRD1 293 aaPredicted RBP12.38□□□□□ -0.43
COL27A1-202ENST00000451716 MOCS1Q9NZB8 636 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 KLHL8Q9P2G9 620 aaPredicted RBP12.38□□□□□ -0.43
COL27A1-202ENST00000451716 ZNF180Q9UJW8 692 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 PLLPQ9Y342 182 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 L3MBTL1Q9Y468 752 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 SDR42E2A6NKP2 422 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 HHLA1C9JL84 531 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 OPHN1O60890 802 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 DCTN3O75935 186 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 STK10O94804 968 aaKnown RBP12.38□□□□□ -0.43
COL27A1-202ENST00000451716 FDFT1P37268 417 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 LGSNQ5TDP6 509 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 C16orf46Q6P387 395 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 ZCCHC23Q6ZST2 131 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 BHLHA9Q7RTU4 235 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 SERINC5Q86VE9 423 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 STKLD1Q8NE28 680 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 OR52K1Q8NGK4 314 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 UTP4Q969X6 686 aaKnown RBP12.38□□□□□ -0.43
COL27A1-202ENST00000451716 CELF6Q96J87 481 aaKnown RBP12.38□□□□□ -0.43
COL27A1-202ENST00000451716 COLEC11Q9BWP8 271 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 TRIM55Q9BYV6 548 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 UBE2OQ9C0C9 1292 aaKnown RBP12.38□□□□□ -0.43
COL27A1-202ENST00000451716 TKTL2Q9H0I9 626 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 FBXW11Q9UKB1 542 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 TRPM7Q96QT4 1865 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 BPTFQ12830 3046 aa12.38□□□□□ -0.43
COL27A1-202ENST00000451716 FAM237BA0A1B0GVD1 139 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 ASGR1P07306 291 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 ERVK-10P10266 1014 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 CYBAP13498 195 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 GLUD2P49448 558 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 FLT3LGP49771 235 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 GJA9P57773 515 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 LRRC8BQ6P9F7 803 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 LRRTM3Q86VH5 581 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 PSTKQ8IV42 348 aaKnown RBP12.37□□□□□ -0.43
COL27A1-202ENST00000451716 RNF168Q8IYW5 571 aaPredicted RBP12.37□□□□□ -0.43
COL27A1-202ENST00000451716 ATXN7L3BQ96GX2 97 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 KCNK13Q9HB14 408 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 CNGB3Q9NQW8 809 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 UBP1Q9NZI7 540 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 HEY2Q9UBP5 337 aa12.37□□□□□ -0.43
COL27A1-202ENST00000451716 MARCOQ9UEW3 520 aaPredicted RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms