RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CACNA1EQ15878 2313 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 MYH10P35580 1976 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3DA0A087WVF3 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3IA0A087WXS9 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3EA0A087X179 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3KA0A087X1G2 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 A0A1W2PP55 124 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 BICDL2A1A5D9 508 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3FA6NER0 549 aaPredicted RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3LB9A6J9 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 MAGEC1O60732 1142 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 GABBR2O75899 941 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 LUC7L3O95232 432 aaKnown RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 MOCS2O96007 188 aaPredicted RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3HP0C7X1 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 BRD2P25440 801 aaKnown RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 HNF1BP35680 557 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 PMS1P54277 932 aaKnown RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 YWHAZP63104 245 aaKnown RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 GCNT1Q02742 428 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 MTA1Q13330 715 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 DCAF6Q58WW2 860 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3GQ6DHY5 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3CQ6IPX1 549 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 DSG4Q86SJ6 1040 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 PRPF39Q86UA1 669 aaKnown RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 TBC1D3Q8IZP1 549 aaPredicted RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 LGI2Q8N0V4 545 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 ATP6V0D2Q8N8Y2 350 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 OR14C36Q8NHC7 312 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 WFDC5Q8TCV5 224 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 DQX1Q8TE96 717 aaKnown RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 CLEC4CQ8WTT0 213 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 SERAC1Q96JX3 654 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 LMLNQ96KR4 655 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 FCRL2Q96LA5 508 aaPredicted RBP13.75□□□□□ -0.21
HMGB3-204ENST00000448905 MTG2Q9H4K7 406 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 POPDC2Q9HBU9 364 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 NAALADL1Q9UQQ1 740 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 SLCO1B1Q9Y6L6 691 aa13.75□□□□□ -0.21
HMGB3-204ENST00000448905 FAM208BQ5VWN6 2430 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 TRIM49BA6NDI0 452 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 TTC34A8MYJ7 566 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 FGFR1OPO95684 399 aaKnown RBP13.74□□□□□ -0.21
HMGB3-204ENST00000448905 IL1BP01584 269 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 KRT5P13647 590 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 NUDT1P36639 197 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 GPD2P43304 727 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 SNX16P57768 344 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 IL9RQ01113 521 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 ELAVL3Q14576 367 aaKnown RBP13.74□□□□□ -0.21
HMGB3-204ENST00000448905 FSCBQ5H9T9 825 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 RABGAP1LQ5R372 815 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 C6orf118Q5T5N4 469 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 FAM46CQ5VWP2 391 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 NADSYN1Q6IA69 706 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 DHRS13Q6UX07 377 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 OXR1Q8N573 874 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 RNF34Q969K3 372 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 MYO19Q96H55 970 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 SLC39A13Q96H72 371 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 LRIG1Q96JA1 1093 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 MRGPRX3Q96LB0 322 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 FAM81BQ96LP2 452 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 FAM129BQ96TA1 746 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 NUCKS1Q9H1E3 243 aaKnown RBP13.74□□□□□ -0.21
HMGB3-204ENST00000448905 KDM4CQ9H3R0 1056 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 THAP9Q9H5L6 903 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 SLCO3A1Q9UIG8 710 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 INTS6Q9UL03 887 aaKnown RBP13.74□□□□□ -0.21
HMGB3-204ENST00000448905 NBEAQ8NFP9 2946 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 ADAMTS20P59510 1910 aa13.74□□□□□ -0.21
HMGB3-204ENST00000448905 PLXNB3Q9ULL4 1909 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 KCNU1A8MYU2 1149 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 F5H5T6 163 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 TLR4O00206 839 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ENC1O14682 589 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 FYNP06241 537 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ZNF18P17022 549 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 TACR2P21452 398 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 RPL34P49207 117 aaKnown RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 CDK17Q00537 523 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 CCDC15Q0P6D6 951 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 KCNH2Q12809 1159 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 STAT4Q14765 748 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 MEA1Q16626 185 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ZC3H12AQ5D1E8 599 aaKnown RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 KCNT1Q5JUK3 1230 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 PRAMEF14Q5SWL7 426 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 TTC39BQ5VTQ0 682 aaPredicted RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ISM2Q6H9L7 571 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 LAYNQ6UX15 382 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ENOSF1Q7L5Y1 443 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 TMEM110Q86TL2 294 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 CHSY1Q86X52 802 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ELOA2Q8IYF1 753 aaPredicted RBP13.73□□□□□ -0.21
HMGB3-204ENST00000448905 MFSD2AQ8NA29 543 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 ADAM32Q8TC27 787 aa13.73□□□□□ -0.21
HMGB3-204ENST00000448905 CNDP2Q96KP4 475 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms