RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 PCED1BQ96HM7 432 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 SIKE1Q9BRV8 207 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 BATF3Q9NR55 127 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 RAD54BQ9Y620 910 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 IQCA1LA6NCM1 817 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 GCKP35557 465 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 AFF1P51825 1210 aaKnown RBP16.41■□□□□ 0.22
SHQ1-202ENST00000444040 RAP1GDS1P52306 607 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 PDE1BQ01064 536 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 KCTD11Q693B1 232 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 CTU1Q7Z7A3 348 aaKnown RBP16.41■□□□□ 0.22
SHQ1-202ENST00000444040 TMEM135Q86UB9 458 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 RBM15BQ8NDT2 890 aaKnown RBP16.41■□□□□ 0.22
SHQ1-202ENST00000444040 ISL2Q96A47 359 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 CPNE1Q99829 537 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 SYT15Q9BQS2 421 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 CNGB3Q9NQW8 809 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 TMEM216Q9P0N5 145 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 TAGLN3Q9UI15 199 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 CPA4Q9UI42 421 aa16.41■□□□□ 0.22
SHQ1-202ENST00000444040 MAGEC1O60732 1142 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 USP12O75317 370 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 AP1G2O75843 785 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 CD68P34810 354 aaPredicted RBP16.4■□□□□ 0.22
SHQ1-202ENST00000444040 MAGEA12P43365 314 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 SLC1A6P48664 564 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 TPI1P60174 286 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 NAA25Q14CX7 972 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 CCL14Q16627 93 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 GRTP1Q5TC63 336 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 PPP1R14CQ8TAE6 165 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 AGAP3Q96P47 875 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 PLA2G4CQ9UP65 541 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 DNAJC16Q9Y2G8 782 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 HHLA1C9JL84 531 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 PGM1P36871 562 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 ALDH18A1P54886 795 aaKnown RBP16.4■□□□□ 0.22
SHQ1-202ENST00000444040 PDZD4Q76G19 769 aaPredicted RBP16.4■□□□□ 0.22
SHQ1-202ENST00000444040 BHLHA9Q7RTU4 235 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 WDR75Q8IWA0 830 aaKnown RBP16.4■□□□□ 0.22
SHQ1-202ENST00000444040 RILPQ96NA2 401 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 LRRC40Q9H9A6 602 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 CASS4Q9NQ75 786 aa16.4■□□□□ 0.22
SHQ1-202ENST00000444040 TIMM13Q9Y5L4 95 aaPredicted RBP16.4■□□□□ 0.22
SHQ1-202ENST00000444040 ZCWPW2A0A1B0GU75 182 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 PRR5-ARHGAP8B1AHC4 643 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 NCAM2O15394 837 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 ZBTB24O43167 697 aaPredicted RBP16.39■□□□□ 0.21
SHQ1-202ENST00000444040 ZNF189O75820 626 aaPredicted RBP16.39■□□□□ 0.21
SHQ1-202ENST00000444040 KRT36O76013 467 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 SERPINE1P05121 402 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 USP17L7P0C7H9 530 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 NCAM1P13591 858 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 TYK2P29597 1187 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 ARRB2P32121 409 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 GMPRP36959 345 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 LHX1P48742 406 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 ARHGAP8P85298 464 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 TBCCQ15814 346 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 CMPK2Q5EBM0 449 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 C10orf107Q8IVU9 208 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 MIEF2Q96C03 454 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 SORT1Q99523 831 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 COPG2Q9UBF2 871 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 SCN4AP35499 1836 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 LTFP02788 710 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 RCN1Q15293 331 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 INTS6LQ5JSJ4 861 aaKnown RBP16.39■□□□□ 0.21
SHQ1-202ENST00000444040 TMEM86AQ8N2M4 240 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 C3orf58Q8NDZ4 430 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 OR6Y1Q8NGX8 325 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 HDAC11Q96DB2 347 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 RBBP8Q99708 897 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 MLPHQ9BV36 600 aaPredicted RBP16.39■□□□□ 0.21
SHQ1-202ENST00000444040 COLEC11Q9BWP8 271 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 SNX15Q9NRS6 342 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 DDIT4Q9NX09 232 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 MIOSQ9NXC5 875 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 TXNDC16Q9P2K2 825 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 STOML1Q9UBI4 398 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 VANGL2Q9ULK5 521 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 SORCS3Q9UPU3 1222 aa16.39■□□□□ 0.21
SHQ1-202ENST00000444040 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.39■□□□□ 0.21
SHQ1-202ENST00000444040 PSMG1O95456 288 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 CYP2B6P20813 491 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 ABL2P42684 1182 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 CLCNKBP51801 687 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 FKBP1BP68106 108 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 KDSRQ06136 332 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 ZBTB17Q13105 803 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 UBAP2LQ14157 1087 aaKnown RBP16.38■□□□□ 0.21
SHQ1-202ENST00000444040 RCN2Q14257 317 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 FRG1Q14331 258 aaKnown RBP16.38■□□□□ 0.21
SHQ1-202ENST00000444040 RABGAP1LQ5R372 815 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 MAVSQ7Z434 540 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 CMC1Q7Z7K0 106 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 ARHGAP24Q8N264 748 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 DCLK2Q8N568 766 aa16.38■□□□□ 0.21
SHQ1-202ENST00000444040 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.38■□□□□ 0.21
SHQ1-202ENST00000444040 DPF3Q92784 378 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms