RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 GBE1Q04446 702 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 UBE3AQ05086 875 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 PLD1Q13393 1074 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TRIP4Q15650 581 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 NUGGCQ68CJ6 796 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 NCBP2-AS2Q69YL0 99 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 MIB1Q86YT6 1006 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 IQCF2Q8IXL9 164 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 CAVIN3Q969G5 261 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TRMT2BQ96GJ1 504 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 SNF8Q96H20 258 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 SLC39A13Q96H72 371 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ABHD8Q96I13 439 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 FMO2Q99518 471 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 C17orf80Q9BSJ5 609 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 FAM129AQ9BZQ8 928 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 PCDH9Q9HC56 1237 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 GRHL1Q9NZI5 618 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 SLC12A6Q9UHW9 1150 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 COL4A4P53420 1690 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 CFAP69A5D8W1 941 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 TGM5O43548 720 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 LPXNO60711 386 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 PAGE1O75459 146 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 LRIG2O94898 1065 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 MOCS2O96007 188 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 RPSAP08865 295 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ERCC2P18074 760 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 KLRC2P26717 231 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 EPHB2P29323 1055 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 KPNA1P52294 538 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ERVFC1P60507 584 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 DPYSQ14117 519 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 KBTBD12Q3ZCT8 623 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 C9orf50Q5SZB4 431 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 PDZD4Q76G19 769 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 CCDC80Q76M96 950 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 DNAJB7Q7Z6W7 309 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ITIH5Q86UX2 942 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ZNF276Q8N554 614 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 MRPL43Q8N983 215 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 BBOF1Q8ND07 529 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 SPPL3Q8TCT6 385 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 POF1BQ8WVV4 589 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ZNF570Q96NI8 536 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 KLHL5Q96PQ7 755 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 NACA2Q9H009 215 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 NEUROG2Q9H2A3 272 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 CCSER2Q9H7U1 834 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 ETNK2Q9NVF9 386 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 WHRNQ9P202 907 aa8.32□□□□□ -1.08
CCDC39-201ENST00000442201 UXTQ9UBK9 157 aaPredicted RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 MTRF1LQ9UGC7 380 aaKnown RBP8.32□□□□□ -1.08
CCDC39-201ENST00000442201 PATJQ8NI35 1801 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 SLC12A8A0AV02 714 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ZNF840PA6NDX5 716 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 KCNU1A8MYU2 1149 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 MAP3K6O95382 1288 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 RB1P06400 928 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 FAM153BP0C7A2 387 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 SPATA31D3P0C874 917 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 IVDP26440 423 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 HTR7P34969 479 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ATP5C1P36542 298 aaKnown RBP8.31□□□□□ -1.08
CCDC39-201ENST00000442201 GGCXP38435 758 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 DYNC1I2Q13409 638 aaKnown RBP8.31□□□□□ -1.08
CCDC39-201ENST00000442201 FAM153CQ494X1 144 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 HECTD3Q5T447 861 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 SNX30Q5VWJ9 437 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 PLPP4Q5VZY2 271 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 SPATA31D4Q6ZUB0 917 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 CCDC149Q6ZUS6 474 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 CDKL3Q8IVW4 592 aaPredicted RBP8.31□□□□□ -1.08
CCDC39-201ENST00000442201 FBXO25Q8TCJ0 367 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 LRRC45Q96CN5 670 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 FCRL2Q96LA5 508 aaPredicted RBP8.31□□□□□ -1.08
CCDC39-201ENST00000442201 DHRS1Q96LJ7 313 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 C10orf88Q9H8K7 445 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 TLR9Q9NR96 1032 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ZDHHC18Q9NUE0 388 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 DTLQ9NZJ0 730 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 FAM153AQ9UHL3 310 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 DNMT3LQ9UJW3 386 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 CSPG5O95196 566 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 PPP3CCP48454 512 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 CCNG1P51959 295 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 RING1Q06587 406 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 PAFAH1B3Q15102 231 aaKnown RBP8.31□□□□□ -1.08
CCDC39-201ENST00000442201 LACTB2Q53H82 288 aaPredicted RBP8.31□□□□□ -1.08
CCDC39-201ENST00000442201 LILRA6Q6PI73 481 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ZDHHC24Q6UX98 284 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 UNC45BQ8IWX7 931 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ATP6V0D2Q8N8Y2 350 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 FAM71DQ8N9W8 422 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 GLIS1Q8NBF1 620 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 PSMG2Q969U7 264 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ANKRD27Q96NW4 1050 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 ZFATQ9P243 1243 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 SNX10Q9Y5X0 201 aa8.31□□□□□ -1.08
CCDC39-201ENST00000442201 BCLAF3A2AJT9 711 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 499.6 ms