RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 Q9Y3F1 56 aa16.82■□□□□ 0.28
CLCNKA-203ENST00000439316 CASP8AP2Q9UKL3 1982 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 HCRTO43612 131 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 BUD23O43709 281 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 SMIM24O75264 130 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 CYBAP13498 195 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 LCP1P13796 627 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 CCDC130P13994 396 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 GLUD2P49448 558 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 HARS2P49590 506 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 IDH3AP50213 366 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 COPAP53621 1224 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 SLC25A3Q00325 362 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 PDE1BQ01064 536 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 BTKQ06187 659 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 SLC25A41Q8N5S1 370 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 PHC3Q8NDX5 983 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 GSTCDQ8NEC7 633 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 SHKBP1Q8TBC3 707 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 PPP4R1Q8TF05 950 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 TRAPPC9Q96Q05 1148 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 S100A14Q9HCY8 104 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 SYBUQ9NX95 663 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 COPG2Q9UBF2 871 aa16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 SF3B1O75533 1304 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLCNKA-203ENST00000439316 CEP350Q5VT06 3117 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ZNF195O14628 629 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 STK10O94804 968 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 MYL3P08590 195 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ADORA2BP29275 332 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ARRB2P32121 409 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 MAGEA12P43365 314 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 HTRA3P83110 453 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 CDC16Q13042 620 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 TRIM32Q13049 653 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 FSCN1Q16658 493 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 RNF220Q5VTB9 566 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 RASSF3Q86WH2 238 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 PSTKQ8IV42 348 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 C7orf31Q8N865 590 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 SPDYE1Q8NFV5 336 aaPredicted RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 OR6Y1Q8NGX8 325 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ISL2Q96A47 359 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 P2RY11Q96G91 374 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 TTC1Q99614 292 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 PNPOQ9NVS9 261 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 RNF186Q9NXI6 227 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 PDP2Q9P2J9 529 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 EME2A4GXA9 379 aaPredicted RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 USP1O94782 785 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 SMIM10L2AP0DMW4 78 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 SMIM10L2BP0DMW5 78 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 PSMB4P28070 264 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 GP5P40197 560 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ACADSBP45954 432 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ERFP50548 548 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ABCE1P61221 599 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 MFSD10Q14728 455 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 FOXB2Q5VYV0 432 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 PGM2L1Q6PCE3 622 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 ZNF410Q86VK4 478 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 FAM131BQ86XD5 332 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 CRYBG2Q8N1P7 616 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 POU5F2Q8N7G0 328 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 BEST2Q8NFU1 509 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 KBTBD7Q8WVZ9 684 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 C18orf25Q96B23 403 aaPredicted RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 PIH1D1Q9NWS0 290 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 SNTG2Q9NY99 539 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 TMEM216Q9P0N5 145 aa16.8■□□□□ 0.28
CLCNKA-203ENST00000439316 DUSP11O75319 330 aaKnown RBP16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 BAG2O95816 211 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 MATKP42679 507 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 VEGFBP49765 207 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 OTUD1Q5VV17 481 aaPredicted RBP16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 C9orf57Q5W0N0 161 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 ACTRT2Q8TDY3 377 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 HSFY1Q96LI6 401 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 IGSF9Q9P2J2 1179 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 ADAM28Q9UKQ2 775 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 NRCAMQ92823 1304 aa16.79■□□□□ 0.28
CLCNKA-203ENST00000439316 MYADML2A6NDP7 307 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 ARHGAP42A6NI28 874 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 RRN3P2A6NIE6 340 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 LYNP07948 512 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 RALBP11234 206 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 GNAT1P11488 350 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 MX2P20592 715 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 GARSP41250 739 aaKnown RBP16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 SULT1E1P49888 294 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 DEUP1Q05D60 604 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 HNRNPDQ14103 355 aaKnown RBP16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 SLC25A52Q3SY17 297 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PPM1JQ5JR12 505 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 RALGPS1Q5JS13 557 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 SPANXN3Q5MJ09 141 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 GRTP1Q5TC63 336 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 PDPK2PQ6A1A2 396 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 SLC30A9Q6PML9 568 aa16.78■□□□□ 0.28
CLCNKA-203ENST00000439316 DHDDSQ86SQ9 333 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms