RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 COMTP21964 271 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 MYL9P24844 172 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ALDH5A1P51649 535 aaPredicted RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 ARHGEF7Q14155 803 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 KIF2BQ8N4N8 673 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 OR52L1Q8NGH7 329 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 IPCEF1Q8WWN9 437 aaPredicted RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 CASKIN2Q8WXE0 1202 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 S100A13Q99584 98 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ELOVL6Q9H5J4 265 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 EPB41L4AQ9HCS5 686 aaPredicted RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 PDGFCQ9NRA1 345 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.32□□□□□ -1.24
VPS53-204ENST00000437048 PSME2Q9UL46 239 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 NR2E1Q9Y466 385 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 MAGI3Q5TCQ9 1506 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 FAM20BO75063 409 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 SNX4O95219 450 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CCNG1P51959 295 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ZNF268Q14587 947 aaPredicted RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 CATSPER4Q7RTX7 472 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ZNF438Q7Z4V0 828 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 COPZ2Q9P299 210 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ALG11Q2TAA5 492 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ANKRD40Q6AI12 368 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ESRP1Q6NXG1 681 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 ERAP2Q6P179 960 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 KLHL32Q96NJ5 620 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 UNKQ9C0B0 810 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 LNPEPQ9UIQ6 1025 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 SNX7Q9UNH6 387 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ZNF318Q5VUA4 2279 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 CCNKO75909 580 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 EPN2O95208 641 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PRLP01236 227 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ALOX12P18054 663 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 RPL14P50914 215 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 HEATR4Q86WZ0 1026 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 FAM126BQ8IXS8 530 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 IQGAP1P46940 1657 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 STX16-NPEPL1H3BU86 382 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 DFNA5O60443 496 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 YES1P07947 543 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 ATP6V1B2P21281 511 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 PNLIPRP1P54315 467 aa7.32□□□□□ -1.24
VPS53-204ENST00000437048 THUMPD1Q9NXG2 353 aaKnown RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 CHORDC1Q9UHD1 332 aaPredicted RBP7.32□□□□□ -1.24
VPS53-204ENST00000437048 CSH1P0DML2 217 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 CSH2P0DML3 217 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PTGS2P35354 604 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 YAP1P46937 504 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 C15orf59Q2T9L4 293 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 PQLC1Q8N2U9 271 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 MCFD2Q8NI22 146 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SNRNP27Q8WVK2 155 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 ADI1Q9BV57 179 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 XKR8Q9H6D3 395 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 MLXQ9UH92 298 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SLC9A8Q9Y2E8 581 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 KLHL33A6NCF5 533 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 APOC4-APOC2K7ER74 178 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TOP3BO95985 862 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 APOC2P02655 101 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 GK3PQ14409 553 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 CNSTQ6PJW8 725 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 UBASH3BQ8TF42 649 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 CLPBQ9H078 707 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 IGSF9Q9P2J2 1179 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 A0A1W2PQ72 361 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 CLIC2O15247 247 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 KLHL18O94889 574 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SRPRAP08240 638 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 FAM228BP0C875 321 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 IL5RAQ01344 420 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PRKG2Q13237 762 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SZRD1Q7Z422 152 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PPP3R2Q96LZ3 170 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 ZNF302Q9NR11 478 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 CCNL1Q9UK58 526 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 CDH7Q9ULB5 785 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 ST14Q9Y5Y6 855 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 RRN3P2A6NIE6 340 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PRPF4O43172 522 aaKnown RBP eCLIP7.31□□□□□ -1.241e-8■■□□□ 11.6
VPS53-204ENST00000437048 SLC5A9Q2M3M2 681 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TCEAL5Q5H9L2 206 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PITRM1Q5JRX3 1037 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 NFKBIL1Q9UBC1 381 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 CKLFQ9UBR5 152 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TMEM2Q9UHN6 1383 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PSME3P61289 254 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PPP1R15BQ5SWA1 713 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 C10orf62Q5T681 223 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 THEMIS2Q5TEJ8 643 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 MRPL57Q9BQC6 102 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 HEMGNQ9BXL5 484 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 ZNF701M0R085 212 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 GSCP56915 257 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 ATP6V0D1P61421 351 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 MKRN4PQ13434 485 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 SYT16Q17RD7 645 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms