RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 RBM12Q9NTZ6 932 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 LCMT1Q9UIC8 334 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 NDRG2Q9UN36 371 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 TBC1D30Q9Y2I9 924 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 MRPS17Q9Y2R5 130 aaKnown RBP12.81□□□□□ -0.36
USP40-205ENST00000430158 STARD13Q9Y3M8 1113 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 OR51B4Q9Y5P0 310 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 CKAP5Q14008 2032 aa12.81□□□□□ -0.36
USP40-205ENST00000430158 MUC22E2RYF6 1773 aaPredicted RBP12.8□□□□□ -0.36
USP40-205ENST00000430158 A0A1B0GVM2 712 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TCAF2A6NFQ2 919 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 PRR33A8MZF0 331 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.8□□□□□ -0.36
USP40-205ENST00000430158 BUB1BO60566 1050 aaPredicted RBP12.8□□□□□ -0.36
USP40-205ENST00000430158 RARAP10276 462 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 CD70P32970 193 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TNFRSF4P43489 277 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 DGKGP49619 791 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 PLK1P53350 603 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 KRT83P78385 493 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 KDSRQ06136 332 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 GRSF1Q12849 480 aaKnown RBP eCLIP12.8□□□□□ -0.36
USP40-205ENST00000430158 LMAN2Q12907 356 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 MESDQ14696 234 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 UBXN2BQ14CS0 331 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 DPYSL2Q16555 572 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 ATP13A4Q4VNC1 1196 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 BOLA3Q53S33 107 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 DGKKQ5KSL6 1271 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 RABGAP1LQ5R372 815 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TTC39BQ5VTQ0 682 aaPredicted RBP12.8□□□□□ -0.36
USP40-205ENST00000430158 GRAMD4Q6IC98 578 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 PKN3Q6P5Z2 889 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 ZNF662Q6ZS27 426 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 CHST9Q7L1S5 443 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 ADIPOR2Q86V24 386 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 LRRC57Q8N9N7 239 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 FLCNQ8NFG4 579 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TPCN2Q8NHX9 752 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TEKT4Q8WW24 435 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TSC1Q92574 1164 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 RPRD1AQ96P16 312 aaPredicted RBP12.8□□□□□ -0.36
USP40-205ENST00000430158 KCTD15Q96SI1 283 aaPredicted RBP12.8□□□□□ -0.36
USP40-205ENST00000430158 CHRDQ9H2X0 955 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 LMAN1LQ9HAT1 526 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 ARHGEF4Q9NR80 690 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 MPP6Q9NZW5 540 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 STIM2Q9P246 746 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 TRIM10Q9UDY6 481 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 AP4E1Q9UPM8 1137 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 SIT1Q9Y3P8 196 aa12.8□□□□□ -0.36
USP40-205ENST00000430158 WASH4PA8MWX3 477 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 PRPSAP2O60256 369 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 CLDN11O75508 207 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 APODP05090 189 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 DCNP07585 359 aaKnown RBP12.79□□□□□ -0.36
USP40-205ENST00000430158 IL4RP24394 825 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 HCAR3P49019 387 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 CDH4P55283 916 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 EFHC2Q5JST6 749 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 KCNT1Q5JUK3 1230 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 EMC10Q5UCC4 262 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 C11orf63Q6NUN7 778 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 Q6ZS52 159 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 SYNPOQ8N3V7 929 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 USP33Q8TEY7 942 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 TTC17Q96AE7 1141 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 LRFN3Q9BTN0 628 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 C1QTNF1Q9BXJ1 281 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 KLC2Q9H0B6 622 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 GOLPH3Q9H4A6 298 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 RETREG1Q9H6L5 497 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 NOL6Q9H6R4 1146 aaKnown RBP12.79□□□□□ -0.36
USP40-205ENST00000430158 LUC7LQ9NQ29 371 aaKnown RBP12.79□□□□□ -0.36
USP40-205ENST00000430158 ABCB8Q9NUT2 735 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 NDFIP2Q9NV92 336 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 C2orf42Q9NWW7 574 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 ALG6Q9Y672 507 aa12.79□□□□□ -0.36
USP40-205ENST00000430158 CHURC1-FNTBB4DL54 471 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 SRGAP2O75044 1071 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 PABPC1P11940 636 aaKnown RBP12.78□□□□□ -0.36
USP40-205ENST00000430158 RHOQP17081 205 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 COMTP21964 271 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 AVPR2P30518 371 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 HTR7P34969 479 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 SLC1A1P43005 524 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 LSM11P83369 360 aaKnown RBP eCLIP12.78□□□□□ -0.36
USP40-205ENST00000430158 ENPP2Q13822 863 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 DPYSQ14117 519 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 SMTNL2Q2TAL5 461 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 FUT11Q495W5 492 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 FBXO43Q4G163 708 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 TMEM31Q5JXX7 168 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 LRRC38Q5VT99 294 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 LRRC31Q6UY01 552 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 POLNQ7Z5Q5 900 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 MFN1Q8IWA4 741 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 CARNMT1Q8N4J0 409 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 TBC1D31Q96DN5 1066 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 ZNF830Q96NB3 372 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms