RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 FAR2Q96K12 515 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MAP7D2Q96T17 732 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MNTQ99583 582 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 GPR20Q99678 358 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 NUDT16L1Q9BRJ7 211 aaKnown RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 LMAN2LQ9H0V9 348 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 PPP1R14DQ9NXH3 145 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 POLKQ9UBT6 870 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 NKX1-2Q9UD57 310 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 NIP7Q9Y221 180 aaKnown RBP eCLIP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 SSX2IPQ9Y2D8 614 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 SLC27A6Q9Y2P4 619 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 MRPS17Q9Y2R5 130 aaKnown RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 IBTKQ9P2D0 1353 aaPredicted RBP4.49□□□□□ -1.69
HMGB3-203ENST00000430118 HEG1Q9ULI3 1381 aa4.49□□□□□ -1.69
HMGB3-203ENST00000430118 RBBP6Q7Z6E9 1792 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 PAPPA2Q9BXP8 1791 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 LOC105369274A0A096LPK9 316 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 LOC102723532A0A0G2JNH3 316 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 A0A1W2PPH5 198 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FSD2A1L4K1 749 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 MARCH11A6NNE9 402 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 F5H697 171 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 USO1O60763 962 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 TMCC2O75069 709 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 KRT38O76015 456 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 C1QTNF9P0C862 333 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 MMP8P22894 467 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 RPS12P25398 132 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 NF2P35240 595 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 GPD2P43304 727 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 GSTM5P46439 218 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 HSD11B2P80365 405 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 POU5F1Q01860 360 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 NUCB1Q02818 461 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FPGSQ05932 587 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 SLC39A6Q13433 755 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FZD5Q13467 585 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 KCNJ12Q14500 433 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FAM133BQ5BKY9 247 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 RBM20Q5T481 1227 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 LIPMQ5VYY2 423 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FAM90A2PQ658T7 463 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 DENND1BQ6P3S1 775 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 LRRC55Q6ZSA7 311 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 PIK3AP1Q6ZUJ8 805 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 TMTC3Q6ZXV5 915 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 SYT13Q7L8C5 426 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 GDF7Q7Z4P5 450 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 DTX2Q86UW9 622 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 OR4N4Q8N0Y3 316 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 C1orf131Q8NDD1 294 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 NSUN7Q8NE18 718 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 ZCCHC10Q8TBK6 192 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FUBP1Q96AE4 644 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 RNF125Q96EQ8 232 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 PIGSQ96S52 555 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 TESK2Q96S53 571 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 NPAS1Q99742 590 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FUZQ9BT04 418 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 CCDC68Q9H2F9 335 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 CHMP4BQ9H444 224 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 NRDE2Q9H7Z3 1164 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 SYNPO2LQ9H987 977 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 SUFUQ9UMX1 484 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 ZFR2Q9UPR6 939 aaKnown RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 SH2B3Q9UQQ2 575 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 GDAQ9Y2T3 454 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 USP15Q9Y4E8 981 aaPredicted RBP4.48□□□□□ -1.69
HMGB3-203ENST00000430118 SNX14Q9Y5W7 946 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 FPGT-TNNI3KV9GXZ4 949 aa4.48□□□□□ -1.69
HMGB3-203ENST00000430118 KIF7Q2M1P5 1343 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 SNED1Q8TER0 1413 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 A0A1W2PPC1 479 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CCDC78A2IDD5 438 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 PI4KAP2A4QPH2 592 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 ZAR1LA6NP61 321 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CAPN14A8MX76 684 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 AGPSO00116 658 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 LEFTY2O00292 366 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 RNMTO43148 476 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CER1O95813 267 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 PTMAP06454 111 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 TPM2P07951 284 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 PGM1P36871 562 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 PNPLA4P41247 253 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 MAGEA10P43363 369 aaPredicted RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 DRG2P55039 364 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 EIF4A1P60842 406 aaKnown RBP4.47□□□□□ -1.69
HMGB3-203ENST00000430118 MC2RQ01718 297 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 MTAPQ13126 283 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 TOMM20Q15388 145 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 MEA1Q16626 185 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 SPDYE7PQ495Y7 208 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 CRY2Q49AN0 593 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 TMEM196Q5HYL7 178 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 SLC9C2Q5TAH2 1124 aa4.47□□□□□ -1.69
HMGB3-203ENST00000430118 NT5DC1Q5TFE4 455 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms