RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 PON1P27169 355 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 STK19P49842 368 aaPredicted RBP17.65■□□□□ 0.42
TRIM39-209ENST00000428728 CDK17Q00537 523 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 TEAD4Q15561 434 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 CST6Q15828 149 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 ZNF423Q2M1K9 1284 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 FAM183BPQ6ZVS7 135 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 IRF2BP1Q8IU81 584 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 MMAAQ8IVH4 418 aaKnown RBP17.65■□□□□ 0.42
TRIM39-209ENST00000428728 DEFB106AQ8N104 65 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 PNPLA1Q8N8W4 532 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 RNF34Q969K3 372 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 PPP1R13BQ96KQ4 1090 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 RPL10LQ96L21 214 aaKnown RBP17.65■□□□□ 0.42
TRIM39-209ENST00000428728 FBXL12Q9NXK8 326 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 NCKAP1Q9Y2A7 1128 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 SNX11Q9Y5W9 270 aa17.65■□□□□ 0.42
TRIM39-209ENST00000428728 DOCK4Q8N1I0 1966 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 EDDM13A0A1B0GTR0 161 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 KCNU1A8MYU2 1149 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 SRPRAP08240 638 aaKnown RBP17.64■□□□□ 0.41
TRIM39-209ENST00000428728 PDGFRAP16234 1089 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 ABCB4P21439 1286 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 PSMD8P48556 350 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 ECT2LQ008S8 904 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 CENPCQ03188 943 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 KIF19Q2TAC6 998 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 C9orf64Q5T6V5 341 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 OR6B2Q6IFH4 312 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 RAB44Q7Z6P3 723 aaPredicted RBP17.64■□□□□ 0.41
TRIM39-209ENST00000428728 WDTC1Q8N5D0 677 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 SLC2A13Q96QE2 648 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 SIX2Q9NPC8 291 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 PLCB1Q9NQ66 1216 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.64■□□□□ 0.41
TRIM39-209ENST00000428728 SLC12A6Q9UHW9 1150 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 SLCO3A1Q9UIG8 710 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 PCOLCE2Q9UKZ9 415 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 MSRB2Q9Y3D2 182 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 ITIH6Q6UXX5 1313 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 AKAP13Q12802 2813 aa17.64■□□□□ 0.41
TRIM39-209ENST00000428728 GTPBP10A4D1E9 387 aaKnown RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 TMEM8BA6NDV4 472 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 HSF2BPO75031 334 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 RNASEH2AO75792 299 aaKnown RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 ERBB2P04626 1255 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 ZNF883P0CG24 379 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 CD27P26842 260 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 CCR1P32246 355 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 GGCXP38435 758 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 GRIA4P48058 902 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 PTK2Q05397 1052 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 NME3Q13232 169 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 MAN2A1Q16706 1144 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 HSP90AA4PQ58FG1 418 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 KIAA0895LQ68EN5 471 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 NCEH1Q6PIU2 408 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 C11orf57Q6ZUT1 292 aaPredicted RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 USP30Q70CQ3 517 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 ADAT2Q7Z6V5 191 aaKnown RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 CCAR2Q8N163 923 aaKnown RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 STK40Q8N2I9 435 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 KDF1Q8NAX2 398 aaPredicted RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 MLKLQ8NB16 471 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 NOX5Q96PH1 765 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 PRMT1Q99873 361 aaKnown RBP17.63■□□□□ 0.41
TRIM39-209ENST00000428728 OMDQ99983 421 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 SYNCQ9H7C4 482 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 DNAJC12Q9UKB3 198 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 SCML1Q9UN30 329 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 PCDHGC3Q9UN70 934 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 ANKRD6Q9Y2G4 727 aa17.63■□□□□ 0.41
TRIM39-209ENST00000428728 A0A1B0GVM2 712 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 FAM170AA1A519 330 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 TCAF2A6NFQ2 919 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 KCNK3O14649 394 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 CBFA2T3O75081 653 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 DAB1O75553 588 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 IGHV4-34P06331 123 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 GLI1P08151 1106 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 SLC2A3P11169 496 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 PRKCSHP14314 528 aaPredicted RBP17.62■□□□□ 0.41
TRIM39-209ENST00000428728 MZF1P28698 734 aaPredicted RBP17.62■□□□□ 0.41
TRIM39-209ENST00000428728 KRT9P35527 623 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 IRAK1P51617 712 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 EIF4EBP2Q13542 120 aaPredicted RBP17.62■□□□□ 0.41
TRIM39-209ENST00000428728 ARID5BQ14865 1188 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 PTPN20Q4JDL3 420 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 EFHC1Q5JVL4 640 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 RABGAP1LQ5R372 815 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 TTC39BQ5VTQ0 682 aaPredicted RBP17.62■□□□□ 0.41
TRIM39-209ENST00000428728 OLFML1Q6UWY5 402 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 SLC47A2Q86VL8 602 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 KDM1BQ8NB78 822 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 RPRD1AQ96P16 312 aaPredicted RBP17.62■□□□□ 0.41
TRIM39-209ENST00000428728 NEUROG2Q9H2A3 272 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 CLSTN2Q9H4D0 955 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 ASNSD1Q9NWL6 643 aa17.62■□□□□ 0.41
TRIM39-209ENST00000428728 RALYQ9UKM9 306 aaKnown RBP17.62■□□□□ 0.41
TRIM39-209ENST00000428728 APOBEC2Q9Y235 224 aaKnown RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms