RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 IL6STP40189 918 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NME5P56597 212 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 MFSD5Q6N075 450 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 OR52L1Q8NGH7 329 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 PUS7LQ9H0K6 701 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 FAM196BA6NMK8 535 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 H3BN98 237 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ENO2P09104 434 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ETFBP38117 255 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 XRRA1Q6P2D8 792 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 TTC7BQ86TV6 843 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 GPALPP1Q8IXQ4 340 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 UXS1Q8NBZ7 420 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 OR8H1Q8NGG4 311 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 URGCPQ8TCY9 931 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NIF3L1Q9GZT8 377 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 IDO1P14902 403 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ELP6Q0PNE2 266 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 CNSTQ6PJW8 725 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NT5C1AQ9BXI3 368 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 YTHDF1Q9BYJ9 559 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 TMEM9Q9P0T7 183 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 IFT80Q9P2H3 777 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 FBXO9Q9UK97 447 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 ASTN2O75129 1339 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 SMCO3A2RU48 225 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 TRAFD1O14545 582 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 PPIBP23284 216 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 HARS2P49590 506 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 USF2Q15853 346 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 DDI2Q5TDH0 399 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 FASTKD5Q7L8L6 764 aaKnown RBP13.13□□□□□ -0.31
COL6A3-206ENST00000409809 SLC9A7Q96T83 725 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 AIFM2Q9BRQ8 373 aa13.13□□□□□ -0.31
COL6A3-206ENST00000409809 NADKO95544 446 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 SRBD1Q8N5C6 995 aaKnown RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 RPS6KB2Q9UBS0 482 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 MAGEL2Q9UJ55 1249 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 STX16-NPEPL1H3BU86 382 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 STX16O14662 325 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 SMNDC1O75940 238 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PIK3CBP42338 1070 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PHC1P78364 1004 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 NME3Q13232 169 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 EGFLAMQ63HQ2 1017 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 FIG4Q92562 907 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 FAM129BQ96TA1 746 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 S100A13Q99584 98 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PHF20Q9BVI0 1012 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 POLR3FQ9H1D9 316 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 TRIM10Q9UDY6 481 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 LRFN2Q9ULH4 789 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 CLCA2Q9UQC9 943 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 FCER1AP12319 257 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 HSD17B12Q53GQ0 312 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 BHLHB9Q6PI77 547 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 LARGE2Q8N3Y3 721 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 TDRD1Q9BXT4 1180 aaKnown RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 VANGL2Q9ULK5 521 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 GMPPBQ9Y5P6 360 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 USP32Q8NFA0 1604 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PPP1R3GB7ZBB8 358 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 NR2F6P10588 404 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 FOXD4Q12950 439 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PYHIN1Q6K0P9 492 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PRR5LQ6MZQ0 368 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF549Q6P9A3 640 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 NLGN1Q8N2Q7 840 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF540Q8NDQ6 660 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 OR56A4Q8NGH8 313 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 AKAP1Q92667 903 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 HOPXQ9BPY8 73 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PNMA3Q9UL41 463 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 HACD1B0YJ81 288 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF24P17028 368 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 FAAH2Q6GMR7 532 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 ESRP1Q6NXG1 681 aaKnown RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 MYO1HQ8N1T3 1032 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 DHX33Q9H6R0 707 aaKnown RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 SEC14L4Q9UDX3 406 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PCDHGC5Q9Y5F6 944 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PNPLA4P41247 253 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 DGCR6Q14129 220 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 SLC7A14Q8TBB6 771 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 IKZF3Q9UKT9 509 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PCDHA6Q9UN73 950 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PCDHA8Q9Y5H6 950 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 VCLP18206 1134 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 TMEM165Q9HC07 324 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 RABL2AQ9UBK7 228 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-206ENST00000409809 RABL2BQ9UNT1 228 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 CFL2Q9Y281 166 aa13.12□□□□□ -0.31
COL6A3-206ENST00000409809 PDPK1O15530 556 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 NTRK1P04629 796 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 SKP1P63208 163 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 DPF2Q92785 391 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 RHBDF1Q96CC6 855 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 PAK6Q9NQU5 681 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms