RNA–Protein interactions for RNA: ENST00000406659.3

DNMT3A-206, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best) BASIC

Gene DNMT3A, Length 1,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-206ENST00000406659 AGAP3Q96P47 875 aa25.29■■□□□ 1.64
DNMT3A-206ENST00000406659 RNF208Q9H0X6 261 aa25.29■■□□□ 1.64
DNMT3A-206ENST00000406659 GBA3Q9H227 469 aa25.29■■□□□ 1.64
DNMT3A-206ENST00000406659 IL37Q9NZH6 218 aa25.29■■□□□ 1.64
DNMT3A-206ENST00000406659 TLR6Q9Y2C9 796 aa25.29■■□□□ 1.64
DNMT3A-206ENST00000406659 TTC3P53804 2025 aa25.29■■□□□ 1.64
DNMT3A-206ENST00000406659 FAM159BA6NKW6 160 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 KCNU1A8MYU2 1149 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 MYO1CO00159 1063 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 DFFAO00273 331 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 FAM155BO75949 473 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 RTN3O95197 1032 aaPredicted RBP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 SNRPAP09012 282 aaKnown RBP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 SLC2A3P11169 496 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 TAC1P20366 129 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 ZNF33AQ06730 810 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 ITIH4Q14624 930 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 MANEALQ5VSG8 457 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 CCDC121Q6ZUS5 278 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 CRIPAKQ8N1N5 446 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 LZTR1Q8N653 840 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 BANPQ8N9N5 519 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 SPPL2BQ8TCT7 592 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 GPR152Q8TDT2 470 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 FBXO32Q969P5 355 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 KLF6Q99612 283 aaPredicted RBP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 TRIM56Q9BRZ2 755 aaKnown RBP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 NAT9Q9BTE0 207 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 SMYD2Q9NRG4 433 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 NEU3Q9UQ49 428 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 SLC27A5Q9Y2P5 690 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 CCL5P13501 91 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 HOXC13P31276 330 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 CRADDP78560 199 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 SF3A3Q12874 501 aaKnown RBP eCLIP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 ZBTB17Q13105 803 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 GPR17Q13304 367 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 TRMT10BQ6PF06 316 aaKnown RBP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 CYS1Q717R9 158 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 TET1Q8NFU7 2136 aa25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 PIH1D1Q9NWS0 290 aaKnown RBP25.28■■□□□ 1.64
DNMT3A-206ENST00000406659 NUP205Q92621 2012 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 MTMR11A4FU01 709 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 TRIM49D1C9J1S8 452 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 TM9SF1O15321 606 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 SOAT2O75908 522 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 AP2A1O95782 977 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 JCHAINP01591 159 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 PGAM1P18669 254 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 TUBP50607 506 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 TBX4P57082 545 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 SMARCB1Q12824 385 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 ZKSCAN8Q15776 578 aaPredicted RBP25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 MGAT5BQ3V5L5 792 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 LVRNQ6Q4G3 990 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 ANKS3Q6ZW76 656 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 SERAC1Q96JX3 654 aa25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 SEPT5Q99719 369 aaPredicted RBP25.27■■□□□ 1.64
DNMT3A-206ENST00000406659 ERI2A8K979 691 aaKnown RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 SNX3O60493 162 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 SUN1O94901 812 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 PARNO95453 639 aaKnown RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 CXCL10P02778 98 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 CCNCP24863 283 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 CD68P34810 354 aaPredicted RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 PBX3P40426 434 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 RNF19BQ6ZMZ0 732 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 ATPAF2Q8N5M1 289 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 TEKT5Q96M29 485 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 TSGA13Q96PP4 275 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 GORASP1Q9BQQ3 440 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 TTPALQ9BTX7 342 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 OXCT2Q9BYC2 517 aaPredicted RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 PPP1R12CQ9BZL4 782 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 MOCS1Q9NZB8 636 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 HS3ST4Q9Y661 456 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 PLXNA3P51805 1871 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 E9PAM4 449 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 LPXNO60711 386 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 KRT38O76015 456 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 NFKB1P19838 968 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 MLLT6P55198 1093 aaPredicted RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 NRG1Q02297 640 aaPredicted RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 SLC18A2Q05940 514 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 PRPSAP1Q14558 356 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 PDK4Q16654 411 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 RTP2Q5QGT7 225 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 RSPO2Q6UXX9 243 aaPredicted RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 DEFB128Q7Z7B8 93 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 LRRC43Q8N309 656 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 TCP10LQ8TDR4 215 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 ARNTL2Q8WYA1 636 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 SPATA17Q96L03 361 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 C1orf74Q96LT6 269 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 TLR8Q9NR97 1041 aaKnown RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 SYBUQ9NX95 663 aa25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 USP15Q9Y4E8 981 aaPredicted RBP25.26■■□□□ 1.63
DNMT3A-206ENST00000406659 SCN5AQ14524 2016 aa25.25■■□□□ 1.63
DNMT3A-206ENST00000406659 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP25.25■■□□□ 1.63
DNMT3A-206ENST00000406659 FAM92AA1XBS5 289 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms