RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 SIX5Q8N196 739 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 PHTF2Q8N3S3 785 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 FIBINQ8TAL6 211 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 LMLNQ96KR4 655 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 CALN1Q9BXU9 219 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 ETNK2Q9NVF9 386 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 DNAI1Q9UI46 699 aa16.41■□□□□ 0.22
HMGA1-204ENST00000401473 CCDC66A2RUB6 948 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 LRRD1A4D1F6 860 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 CLDN11O75508 207 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 ZRANB2O95218 330 aaKnown RBP eCLIP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 LUC7L3O95232 432 aaKnown RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 ALADP13716 330 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 ERCC2P18074 760 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 NUMBP49757 651 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 SIGLEC14Q08ET2 396 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 DPYSQ14117 519 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 KRT81Q14533 505 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 PDK2Q15119 407 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 TTC39BQ5VTQ0 682 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 AADACL2Q6P093 401 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 MFSD7Q6UXD7 560 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 TRIM67Q6ZTA4 783 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 RALGPS2Q86X27 583 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 MFN1Q8IWA4 741 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 KATNAL2Q8IYT4 538 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 PCDH19Q8TAB3 1148 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 ALS2CR12Q96Q35 445 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 XPO6Q96QU8 1125 aaKnown RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 TLR10Q9BXR5 811 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 C8orf33Q9H7E9 229 aaPredicted RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 ARHGEF3Q9NR81 526 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 DNAJC17Q9NVM6 304 aaKnown RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 DDX56Q9NY93 547 aaKnown RBP16.4■□□□□ 0.22
HMGA1-204ENST00000401473 FBXL21Q9UKT6 434 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 TBC1D30Q9Y2I9 924 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 MFHAS1Q9Y4C4 1052 aa16.4■□□□□ 0.22
HMGA1-204ENST00000401473 TYW5A2RUC4 315 aaKnown RBP16.39■□□□□ 0.22
HMGA1-204ENST00000401473 H0Y626 953 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 ENC1O14682 589 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 PDGFBP01127 241 aaPredicted RBP16.39■□□□□ 0.22
HMGA1-204ENST00000401473 PYGMP11217 842 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 GLULP15104 373 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 RHOQP17081 205 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 OR1E1P30953 314 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 CD70P32970 193 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 DNA2P51530 1060 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 MLF2Q15773 248 aaPredicted RBP16.39■□□□□ 0.22
HMGA1-204ENST00000401473 DCAF12L1Q5VU92 463 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 TMEM215Q68D42 235 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 TPRG1Q6ZUI0 275 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 CHST9Q7L1S5 443 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 SLC35F6Q8N357 371 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 ARHGEF4Q9NR80 690 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 ABCB8Q9NUT2 735 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 TMEM248Q9NWD8 314 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 DEC1Q9P2X7 70 aa16.39■□□□□ 0.22
HMGA1-204ENST00000401473 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.39■□□□□ 0.22
HMGA1-204ENST00000401473 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-204ENST00000401473 A0A0D9SEW6 157 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 GOLGA6L9A6NEM1 432 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 KRT1P04264 644 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 ARL4AP40617 200 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 CDKN2BP42772 138 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 DGKGP49619 791 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 ADCY2Q08462 1091 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 ZNF177Q13360 481 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-204ENST00000401473 CDH18Q13634 790 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 PON2Q15165 354 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 TAZQ16635 292 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 GEN1Q17RS7 908 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 ANKRD20A8PQ5CZ79 823 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 MAP7D3Q8IWC1 876 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 NETO2Q8NC67 525 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 EZH1Q92800 747 aaPredicted RBP16.39■□□□□ 0.21
HMGA1-204ENST00000401473 FAF2Q96CS3 445 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 ZNF670Q9BS34 389 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 SLC2A11Q9BYW1 496 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 KLC2Q9H0B6 622 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 NOL6Q9H6R4 1146 aaKnown RBP16.39■□□□□ 0.21
HMGA1-204ENST00000401473 INTS6Q9UL03 887 aaKnown RBP16.39■□□□□ 0.21
HMGA1-204ENST00000401473 KIAA1549LQ6ZVL6 1849 aa16.39■□□□□ 0.21
HMGA1-204ENST00000401473 USP34Q70CQ2 3546 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 WASH4PA8MWX3 477 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 MIF4GDA9UHW6 222 aaKnown RBP16.38■□□□□ 0.21
HMGA1-204ENST00000401473 PRRT4C9JH25 899 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 H3BRJ5 948 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 DCLK1O15075 740 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 FANCGO15287 622 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 DAPK3O43293 454 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 KIF5CO60282 957 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 KRT10P13645 584 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 MZF1P28698 734 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-204ENST00000401473 HTR7P34969 479 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 EIF2DP41214 584 aaKnown RBP16.38■□□□□ 0.21
HMGA1-204ENST00000401473 RWDD2BP57060 319 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 LMAN2Q12907 356 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 KIAA0907Q7Z7F0 614 aaPredicted RBP16.38■□□□□ 0.21
HMGA1-204ENST00000401473 TP53INP2Q8IXH6 220 aa16.38■□□□□ 0.21
HMGA1-204ENST00000401473 RCOR2Q8IZ40 523 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms