RNA–Protein interactions for RNA: ENST00000398145.6

HPS4-202, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS4, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-202ENST00000398145 DCUN1D1Q96GG9 259 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 RNF145Q96MT1 663 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 BTBD9Q96Q07 612 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 C1orf50Q9BV19 199 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 TMEM134Q9H6X4 195 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 HMG20AQ9NP66 347 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 MYOZ2Q9NPC6 264 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 FAM198AQ9UFP1 575 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 CDH22Q9UJ99 828 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 IQCA1LA6NCM1 817 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 TMEM114B3SHH9 223 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 PIK3R1P27986 724 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 AKT1P31749 480 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 VSIG10LQ86VR7 867 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 RTKNQ9BST9 563 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 PIF1Q9H611 641 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 SYTL2Q9HCH5 934 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 TIMMDC1Q9NPL8 285 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 SLC38A7Q9NVC3 462 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 FETUBQ9UGM5 382 aa11.28□□□□□ -0.6
HPS4-202ENST00000398145 ZNF197O14709 1029 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 ZSCAN9O15535 394 aaPredicted RBP11.27□□□□□ -0.6
HPS4-202ENST00000398145 SLC25A27O95847 323 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 HIST1H2AGP0C0S8 130 aaPredicted RBP11.27□□□□□ -0.6
HPS4-202ENST00000398145 HIST1H2ADP20671 130 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 GRIA4P48058 902 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 RTP1P59025 263 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 RAD51Q06609 339 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 CDC16Q13042 620 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 TIGD7Q6NT04 549 aaPredicted RBP11.27□□□□□ -0.6
HPS4-202ENST00000398145 PACS1Q6VY07 963 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 PIWIL4Q7Z3Z4 852 aaKnown RBP11.27□□□□□ -0.6
HPS4-202ENST00000398145 CPNE8Q86YQ8 564 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 JOSD2Q8TAC2 188 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 HIST1H2AHQ96KK5 128 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 PPP1R10Q96QC0 940 aaKnown RBP11.27□□□□□ -0.6
HPS4-202ENST00000398145 HIST1H2AJQ99878 128 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 ZNF670Q9BS34 389 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 H2AFJQ9BTM1 129 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 POLR1BQ9H9Y6 1135 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 SPAG4Q9NPE6 437 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 SYBUQ9NX95 663 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 PIK3C2AO00443 1686 aa11.27□□□□□ -0.6
HPS4-202ENST00000398145 A0A087WZ62 844 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 SIN3BO75182 1162 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 PSMB4P28070 264 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 HOXA10P31260 410 aaPredicted RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 MAPK10P53779 464 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 ACTR3P61158 418 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 CSTF3Q12996 717 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 ITGADQ13349 1161 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 NOMO1Q15155 1222 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 RGS21Q2M5E4 152 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 ZNF484Q5JVG2 852 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 ANKRD22Q5VYY1 191 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 OR52K1Q8NGK4 314 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 IL31RAQ8NI17 732 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 FAM136AQ96C01 138 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 VAT1Q99536 393 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 SH3GL1Q99961 368 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 FDXACB1Q9BRP7 624 aaPredicted RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 PRKD2Q9BZL6 878 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 ST6GALNAC4Q9H4F1 302 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 CLK4Q9HAZ1 481 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 TRMT6Q9UJA5 497 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 EIF3LQ9Y262 564 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 CYB561D2O14569 222 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 TRMUO75648 421 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 FAM155BO75949 473 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 FBXO21O94952 628 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 TGFB3P10600 412 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 ETFBP38117 255 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 METTL21CQ5VZV1 264 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 PTRHD1Q6GMV3 140 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 DEFB106AQ8N104 65 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 MIER2Q8N344 545 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 CERS5Q8N5B7 392 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 OR6J1Q8NGC5 347 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 MARK4Q96L34 752 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 BBS2Q9BXC9 721 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 IL22Q9GZX6 179 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 GPBP1L1Q9HC44 474 aaPredicted RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 RBM22Q9NW64 420 aaKnown RBP eCLIP11.27□□□□□ -0.61
HPS4-202ENST00000398145 COMMD8Q9NX08 183 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 IMPAD1Q9NX62 359 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 KLK14Q9P0G3 267 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 RAD54BQ9Y620 910 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 BCL9LQ86UU0 1499 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 SNRPB2P08579 225 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 FBXO47Q5MNV8 452 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 PRAMEF18Q5VWM3 479 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 SZRD1Q7Z422 152 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 AMIGO2Q86SJ2 522 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 FAM83AQ86UY5 434 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 PSTKQ8IV42 348 aaKnown RBP11.27□□□□□ -0.61
HPS4-202ENST00000398145 GIPC3Q8TF64 312 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 SEC14L1Q92503 715 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 VPS33AQ96AX1 596 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 POMKQ9H5K3 350 aa11.27□□□□□ -0.61
HPS4-202ENST00000398145 ZNF180Q9UJW8 692 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms