RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TPP1O14773 563 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 AKAP3O75969 853 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PARP6Q2NL67 630 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 SPANXN3Q5MJ09 141 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 AADACL2Q6P093 401 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 ZNF398Q8TD17 642 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PTCD3Q96EY7 689 aaKnown RBP12.07□□□□□ -0.48
SYNPO-202ENST00000394243 AFF2P51816 1311 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MAGEB16A2A368 324 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PPP2R1BP30154 601 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PSME3P61289 254 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 LIN54Q6MZP7 749 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 AAGABQ6PD74 315 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 MOSPD2Q8NHP6 518 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 SLCO1B3Q9NPD5 702 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PLA2G4CQ9UP65 541 aa12.07□□□□□ -0.48
SYNPO-202ENST00000394243 PGAM1P18669 254 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ZNF621Q6ZSS3 439 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MAGEC3Q8TD91 643 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 APBA2Q99767 749 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 SLC4A5Q9BY07 1137 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 SPAG4Q9NPE6 437 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 IKZF3Q9UKT9 509 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 TRIM38O00635 465 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MYCP01106 439 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MSL3Q8N5Y2 521 aaKnown RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 CBWD1Q9BRT8 395 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MTMR12Q9C0I1 747 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 CRISPLD1Q9H336 500 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 FBXO6Q9NRD1 293 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 RPL26L1Q9UNX3 145 aaKnown RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 KHDRBS3O75525 346 aaKnown RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 NFICP08651 508 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 BLMHQ13867 455 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 TIGD7Q6NT04 549 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 GSTCDQ8NEC7 633 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 RXFP2Q8WXD0 754 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ZNF512Q96ME7 567 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MBOAT7Q96N66 472 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MAN1C1Q9NR34 630 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 CHST7Q9NS84 486 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 C3orf18Q9UK00 162 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MATN2O00339 956 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 VPS4BO75351 444 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MED24O75448 989 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 SNRPB2P08579 225 aaKnown RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ALDH9A1P49189 494 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ST8SIA6P61647 398 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 DLG4P78352 724 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 POU5F1Q01860 360 aaKnown RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 RHAGQ02094 409 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 TMEM62Q0P6H9 643 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 EML3Q32P44 896 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 SPESP1Q6UW49 350 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 FAM47BQ8NA70 645 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 SIPA1Q96FS4 1042 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 OSBPL6Q9BZF3 934 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 RAPGEFL1Q9UHV5 662 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ZMYM5Q9UJ78 669 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 STOML2Q9UJZ1 356 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 LMTK3Q96Q04 1460 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 FARP2O94887 1054 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ALDH1A1P00352 501 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MUTP22033 750 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 ITGA3P26006 1051 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 XIAPP98170 497 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 HSF2Q03933 536 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 CAMK2GQ13555 558 aaPredicted RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 MREGQ8N565 214 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 CLN6Q9NWW5 311 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 LSM7Q9UK45 103 aaKnown RBP12.06□□□□□ -0.48
SYNPO-202ENST00000394243 BCORL1Q5H9F3 1711 aa12.06□□□□□ -0.48
SYNPO-202ENST00000394243 RECQL5O94762 991 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 KCNH1O95259 989 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 ZSCAN5DPP0CG00 497 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SCNN1BP51168 640 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 PLCL1Q15111 1095 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 VPS72Q15906 364 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 GALNT18Q6P9A2 607 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 GATAD2AQ86YP4 633 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 DNAJB14Q8TBM8 379 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 METTL6Q8TCB7 284 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 SEPT5Q99719 369 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 COG5Q9UP83 839 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 BAIAP2Q9UQB8 552 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 UMODL1Q5DID0 1318 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TRDMT1O14717 391 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 AREL1O15033 823 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 TKTP29401 623 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 MCOLN2Q8IZK6 566 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 FAM92AA1XBS5 289 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 STAU1O95793 577 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 RAP1GAPP47736 663 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 CLK2P49760 499 aaKnown RBP12.05□□□□□ -0.48
SYNPO-202ENST00000394243 USP4Q13107 963 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 GIT2Q14161 759 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 C10orf120Q5SQS8 335 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 OLFML2AQ68BL7 652 aa12.05□□□□□ -0.48
SYNPO-202ENST00000394243 FAM131BQ86XD5 332 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms