RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CIR1Q86X95 450 aaPredicted RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 CACUL1Q86Y37 369 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 CCAR2Q8N163 923 aaKnown RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 ZNF366Q8N895 744 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 KDM1BQ8NB78 822 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 PPP1R9BQ96SB3 815 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 TBCBQ99426 244 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 TKTL2Q9H0I9 626 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 CD93Q9NPY3 652 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 METTL5Q9NRN9 209 aaKnown RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 EVLQ9UI08 416 aaPredicted RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 INTS6Q9UL03 887 aaKnown RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 VANGL2Q9ULK5 521 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 HS3ST4Q9Y661 456 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 DOCK4Q8N1I0 1966 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 LNP1A1A4G5 178 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 SRPRAP08240 638 aaKnown RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 TFE3P19532 575 aaPredicted RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 RDXP35241 583 aaKnown RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 TPMTP51580 245 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 CENPCQ03188 943 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 SULT2A1Q06520 285 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 ZNF33AQ06730 810 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 PEAR1Q5VY43 1037 aaPredicted RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 FOXJ1Q92949 421 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 HSPA12BQ96MM6 686 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 C11orf70Q9BRQ4 267 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 FUCA2Q9BTY2 467 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 NUSAP1Q9BXS6 441 aaKnown RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 ADAM33Q9BZ11 813 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 RTN4Q9NQC3 1192 aaKnown RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 ITM2CQ9NQX7 267 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 SEPT11Q9NVA2 429 aaKnown RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 TMEM59LQ9UK28 342 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 PILRBQ9UKJ0 227 aa17.35■□□□□ 0.37
HMGN4-201ENST00000377575 ATXN2Q99700 1313 aaKnown RBP17.35■□□□□ 0.37
HMGN4-201ENST00000377575 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 SYCE3A1L190 88 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 CLDN11O75508 207 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ADCY5O95622 1261 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 IGLV3-19P01714 112 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 UNGP13051 313 aaPredicted RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 PDGFRAP16234 1089 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 FERP16591 822 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ITPKAP23677 461 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 GSCP56915 257 aaPredicted RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 TPM4P67936 248 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ECT2LQ008S8 904 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ZBTB16Q05516 673 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ZNF177Q13360 481 aaPredicted RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 CLEC16AQ2KHT3 1053 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 HNRNPA1L2Q32P51 320 aaKnown RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 GON4LQ3T8J9 2241 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 TTC31Q49AM3 519 aaPredicted RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 TRIM61Q5EBN2 209 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 SYCP2LQ5T4T6 812 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 STPG1Q5TH74 334 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 DEFB119Q8N690 84 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 SLC30A5Q8TAD4 765 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 CEP76Q8TAP6 659 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 IGSF8Q969P0 613 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 TOE1Q96GM8 510 aaKnown RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 MYO19Q96H55 970 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 CFAP57Q96MR6 1250 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 SIK2Q9H0K1 926 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 PRSS16Q9NQE7 514 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 RXFP3Q9NSD7 469 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 WSB2Q9NYS7 404 aaPredicted RBP17.34■□□□□ 0.37
HMGN4-201ENST00000377575 MYO6Q9UM54 1294 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ERVW-1Q9UQF0 538 aa17.34■□□□□ 0.37
HMGN4-201ENST00000377575 ITIH6Q6UXX5 1313 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 MEI4A8MW99 385 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 PATE3B3GLJ2 98 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 TEX33O43247 280 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 DNTTP04053 509 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 CALB1P05937 261 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 C7P10643 843 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 SDC4P31431 198 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 GGCXP38435 758 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 NNMTP40261 264 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 CDH4P55283 916 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 ARID5BQ14865 1188 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 DUOXA1Q1HG43 343 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 C5orf22Q49AR2 442 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 WDR45BQ5MNZ6 344 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 ZNF776Q68DI1 518 aaPredicted RBP17.33■□□□□ 0.36
HMGN4-201ENST00000377575 CXorf57Q6NSI4 855 aaKnown RBP17.33■□□□□ 0.36
HMGN4-201ENST00000377575 LRRC31Q6UY01 552 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 BNIPLQ7Z465 357 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 SLC41A1Q8IVJ1 513 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 ZNF419Q96HQ0 510 aaPredicted RBP17.33■□□□□ 0.36
HMGN4-201ENST00000377575 MRGPRX3Q96LB0 322 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 NUP58Q9BVL2 599 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 ADAM22Q9P0K1 906 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 SUSD2Q9UGT4 822 aa17.33■□□□□ 0.36
HMGN4-201ENST00000377575 ADAMTS9Q9P2N4 1935 aa17.32■□□□□ 0.36
HMGN4-201ENST00000377575 EDDM13A0A1B0GTR0 161 aa17.32■□□□□ 0.36
HMGN4-201ENST00000377575 DCDC2BA2VCK2 349 aa17.32■□□□□ 0.36
HMGN4-201ENST00000377575 RNASEH1O60930 286 aaKnown RBP17.32■□□□□ 0.36
HMGN4-201ENST00000377575 CFIP05156 583 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms